Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OXS entry

There are 4 chains in PDB entry 9OXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 1443
B	ARG 54	LEU 417
C	MET 1	ILE 115
E	A 1	C 7

There are 21 helices in PDB entry 9OXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	194	196	Right-handed 310
Helix 2	AA2	A	489	493	Right-handed 310
Helix 3	AA3	A	506	509	Right-handed 310
Helix 4	AA4	A	855	859	Right-handed 310
Helix 5	AA5	A	1153	1156	Right-handed 310
Helix 6	AA6	A	1352	1369	Right-handed alpha
Helix 7	AA7	A	1372	1376	Right-handed 310
Helix 8	AA8	A	1377	1383	Right-handed alpha
Helix 9	AA9	A	1401	1405	Right-handed alpha
Helix 10	AB1	A	1405	1410	Right-handed alpha
Helix 11	AB2	A	1411	1423	Right-handed alpha
Helix 12	AB3	A	1425	1439	Right-handed alpha
Helix 13	AB4	B	59	70	Right-handed alpha
Helix 14	AB5	B	75	79	Right-handed 310
Helix 15	AB6	B	88	92	Right-handed 310
Helix 16	AB7	B	101	106	Right-handed 310
Helix 17	AB8	C	2	6	Right-handed alpha
Helix 18	AB9	C	13	21	Right-handed alpha
Helix 19	AC1	C	68	74	Right-handed alpha
Helix 20	AC2	C	78	82	Right-handed 310
Helix 21	AC3	C	96	101	Right-handed alpha

There are 33 sheets in PDB entry 9OXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1315	first strand
Strand 2	A	1334	1340	anti-parallel
Strand 3	A	1345	1348	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	A	1398	1400	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	37	41	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	115	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	150	154	anti-parallel
Strand 3	A	158	161	anti-parallel
Strand 4	A	189	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	278	282	anti-parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	293	299	anti-parallel
Strand 5	A	313	314	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	334	338	anti-parallel
Strand 3	A	344	351	anti-parallel
Strand 4	A	357	361	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	391	398	anti-parallel
Strand 3	A	461	469	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	481	first strand
Strand 2	A	499	502	anti-parallel
Strand 3	A	511	515	anti-parallel
Strand 4	A	1015	1017	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	528	first strand
Strand 2	A	995	998	anti-parallel
Strand 3	A	986	991	anti-parallel
Strand 4	A	972	978	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	576	578	anti-parallel
Strand 3	A	583	587	anti-parallel
Strand 4	A	593	594	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	608	612	first strand
Strand 2	A	617	622	anti-parallel
Strand 3	A	625	629	anti-parallel
Strand 4	A	634	639	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	652	first strand
Strand 2	A	655	659	anti-parallel
Strand 3	A	665	670	anti-parallel
Strand 4	A	682	685	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	703	first strand
Strand 2	A	782	789	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	817	818	first strand
Strand 2	A	890	893	anti-parallel
Strand 3	A	877	878	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	854	first strand
Strand 2	A	860	867	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	934	first strand
Strand 2	A	942	945	anti-parallel
Strand 3	A	951	954	anti-parallel
Strand 4	A	962	965	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1028	first strand
Strand 2	A	1033	1043	anti-parallel
Strand 3	A	1070	1079	anti-parallel
Strand 4	A	1092	1093	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1048	first strand
Strand 2	A	1057	1059	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1102	1106	first strand
Strand 2	A	1120	1126	anti-parallel
Strand 3	A	1137	1146	anti-parallel
Strand 4	A	1158	1167	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1172	1178	first strand
Strand 2	A	1181	1186	anti-parallel
Strand 3	A	1189	1195	anti-parallel
Strand 4	A	1200	1202	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1172	1178	first strand
Strand 2	A	1181	1186	anti-parallel
Strand 3	A	1189	1195	anti-parallel
Strand 4	A	1206	1207	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1221	1222	first strand
Strand 2	A	1232	1237	anti-parallel
Strand 3	A	1242	1248	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1258	first strand
Strand 2	A	1267	1273	anti-parallel
Strand 3	A	1261	1262	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1258	first strand
Strand 2	A	1267	1273	anti-parallel
Strand 3	A	1277	1281	anti-parallel
Strand 4	A	1300	1303	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	399	403	anti-parallel
Strand 3	B	389	394	anti-parallel
Strand 4	B	378	383	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	143	147	anti-parallel
Strand 4	B	153	156	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	176	180	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	188	first strand
Strand 2	B	194	199	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	210	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	226	230	anti-parallel
Strand 4	B	236	240	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	252	first strand
Strand 2	B	259	263	anti-parallel
Strand 3	B	270	273	anti-parallel
Strand 4	B	280	284	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	302	307	anti-parallel
Strand 3	B	312	316	anti-parallel
Strand 4	B	319	327	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	339	first strand
Strand 2	B	347	351	anti-parallel
Strand 3	B	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXS