Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OYA entry

There is 1 chain in PDB entry 9OYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 540	GLU 2527

There are 61 helices in PDB entry 9OYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	543	555	Right-handed alpha
Helix 2	AA2	B	559	571	Right-handed alpha
Helix 3	AA3	B	585	596	Right-handed alpha
Helix 4	AA4	B	599	611	Right-handed alpha
Helix 5	AA5	B	625	637	Right-handed alpha
Helix 6	AA6	B	644	659	Right-handed alpha
Helix 7	AA7	B	662	667	Right-handed alpha
Helix 8	AA8	B	670	680	Right-handed alpha
Helix 9	AA9	B	689	701	Right-handed alpha
Helix 10	AB1	B	705	719	Right-handed alpha
Helix 11	AB2	B	721	731	Right-handed alpha
Helix 12	AB3	B	743	751	Right-handed alpha
Helix 13	AB4	B	754	764	Right-handed alpha
Helix 14	AB5	B	767	781	Right-handed alpha
Helix 15	AB6	B	785	795	Right-handed alpha
Helix 16	AB7	B	814	819	Right-handed alpha
Helix 17	AB8	B	833	853	Right-handed alpha
Helix 18	AB9	B	997	1002	Right-handed alpha
Helix 19	AC1	B	1005	1011	Right-handed alpha
Helix 20	AC2	B	1027	1034	Right-handed alpha
Helix 21	AC3	B	1053	1057	Right-handed 310
Helix 22	AC4	B	1101	1106	Right-handed alpha
Helix 23	AC5	B	1191	1195	Right-handed 310
Helix 24	AC6	B	1213	1217	Right-handed 310
Helix 25	AC7	B	1240	1245	Right-handed 310
Helix 26	AC8	B	1261	1267	Right-handed 310
Helix 27	AC9	B	1285	1291	Right-handed 310
Helix 28	AD1	B	1314	1328	Right-handed alpha
Helix 29	AD2	B	1348	1355	Right-handed alpha
Helix 30	AD3	B	1398	1402	Right-handed 310
Helix 31	AD4	B	1404	1409	Right-handed 310
Helix 32	AD5	B	1422	1424	Right-handed 310
Helix 33	AD6	B	1426	1442	Right-handed alpha
Helix 34	AD7	B	1463	1468	Right-handed 310
Helix 35	AD8	B	1469	1474	Right-handed alpha
Helix 36	AD9	B	1494	1509	Right-handed alpha
Helix 37	AE1	B	1517	1520	Right-handed 310
Helix 38	AE2	B	1525	1541	Right-handed alpha
Helix 39	AE3	B	1550	1560	Right-handed alpha
Helix 40	AE4	B	1568	1579	Right-handed alpha
Helix 41	AE5	B	1590	1593	Right-handed 310
Helix 42	AE6	B	1645	1653	Right-handed alpha
Helix 43	AE7	B	1703	1715	Right-handed alpha
Helix 44	AE8	B	1770	1792	Right-handed alpha
Helix 45	AE9	B	1829	1834	Right-handed alpha
Helix 46	AF1	B	1852	1856	Right-handed alpha
Helix 47	AF2	B	1913	1925	Right-handed alpha
Helix 48	AF3	B	1954	1961	Right-handed alpha
Helix 49	AF4	B	1968	1988	Right-handed alpha
Helix 50	AF5	B	1996	1998	Right-handed 310
Helix 51	AF6	B	2040	2045	Right-handed alpha
Helix 52	AF7	B	2053	2068	Right-handed alpha
Helix 53	AF8	B	2074	2079	Right-handed alpha
Helix 54	AF9	B	2079	2090	Right-handed alpha
Helix 55	AG1	B	2094	2100	Right-handed alpha
Helix 56	AG2	B	2107	2115	Right-handed alpha
Helix 57	AG3	B	2126	2133	Right-handed alpha
Helix 58	AG4	B	2134	2139	Right-handed alpha
Helix 59	AG5	B	2208	2211	Right-handed 310
Helix 60	AG6	B	2389	2395	Right-handed alpha
Helix 61	AG7	B	2499	2524	Right-handed alpha

There are 15 sheets in PDB entry 9OYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	802	804	anti-parallel
Strand 3	B	987	988	parallel
Strand 4	B	1016	1017	parallel
Strand 5	B	1040	1041	parallel
Strand 6	B	1063	1064	parallel
Strand 7	B	1087	1089	parallel
Strand 8	B	1111	1113	parallel
Strand 9	B	1133	1135	parallel
Strand 10	B	1157	1159	parallel
Strand 11	B	1177	1179	parallel
Strand 12	B	1200	1202	parallel
Strand 13	B	1224	1226	parallel
Strand 14	B	1249	1251	parallel
Strand 15	B	1272	1274	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1329	1332	first strand
Strand 2	B	1521	1524	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1374	1379	first strand
Strand 2	B	1387	1392	anti-parallel
Strand 3	B	1334	1341	parallel
Strand 4	B	1413	1420	parallel
Strand 5	B	1447	1452	parallel
Strand 6	B	1482	1487	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1547	1549	first strand
Strand 2	B	1595	1597	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1730	1731	first strand
Strand 2	B	1740	1743	anti-parallel
Strand 3	B	1746	1753	anti-parallel
Strand 4	B	1761	1768	anti-parallel
Strand 5	B	1690	1697	anti-parallel
Strand 6	B	1809	1814	anti-parallel
Strand 7	B	1825	1828	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1840	1841	first strand
Strand 2	B	1850	1851	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1894	1897	first strand
Strand 2	B	1902	1907	anti-parallel
Strand 3	B	1944	1947	anti-parallel
Strand 4	B	1935	1938	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2000	2002	first strand
Strand 2	B	2013	2015	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2140	2145	first strand
Strand 2	B	2488	2497	anti-parallel
Strand 3	B	2466	2478	anti-parallel
Strand 4	B	2454	2463	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2156	2157	first strand
Strand 2	B	2166	2168	anti-parallel
Strand 3	B	2177	2183	anti-parallel
Strand 4	B	2189	2195	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2199	2207	first strand
Strand 2	B	2212	2219	anti-parallel
Strand 3	B	2225	2228	anti-parallel
Strand 4	B	2235	2237	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2245	2250	first strand
Strand 2	B	2262	2267	anti-parallel
Strand 3	B	2271	2276	anti-parallel
Strand 4	B	2289	2292	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2300	2305	first strand
Strand 2	B	2315	2319	anti-parallel
Strand 3	B	2322	2326	anti-parallel
Strand 4	B	2334	2337	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2354	2358	first strand
Strand 2	B	2362	2367	anti-parallel
Strand 3	B	2372	2377	anti-parallel
Strand 4	B	2383	2388	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2414	2419	first strand
Strand 2	B	2425	2429	anti-parallel
Strand 3	B	2434	2437	anti-parallel
Strand 4	B	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYA