Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OYF entry

There are 11 chains in PDB entry 9OYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 343
B	SER 2	PRO 366
C	MET 1	GLU 369
D	SER 2	PRO 361
E	MET 1	LEU 334
F	MET 1	ARG 365
G	MET 1	LEU 366
H	G 11	C 42
I	G 1	G 20
J	SER 3	ILE 31
M	G 1	C 10

There are129 helices in PDB entry 9OYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	16	Right-handed alpha
Helix 3	AA3	A	27	45	Right-handed alpha
Helix 4	AA4	A	60	68	Right-handed alpha
Helix 5	AA5	A	90	101	Right-handed alpha
Helix 6	AA6	A	118	123	Right-handed alpha
Helix 7	AA7	A	124	131	Right-handed alpha
Helix 8	AA8	A	146	159	Right-handed alpha
Helix 9	AA9	A	163	175	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	198	206	Right-handed alpha
Helix 12	AB3	A	213	224	Right-handed alpha
Helix 13	AB4	A	225	240	Right-handed alpha
Helix 14	AB5	A	242	265	Right-handed alpha
Helix 15	AB6	A	268	277	Right-handed alpha
Helix 16	AB7	A	279	293	Right-handed alpha
Helix 17	AB8	A	294	314	Right-handed alpha
Helix 18	AB9	A	320	332	Right-handed alpha
Helix 19	AC1	A	337	343	Right-handed alpha
Helix 20	AC2	B	5	10	Right-handed alpha
Helix 21	AC3	B	14	18	Right-handed 310
Helix 22	AC4	B	21	35	Right-handed alpha
Helix 23	AC5	B	50	64	Right-handed alpha
Helix 24	AC6	B	76	85	Right-handed alpha
Helix 25	AC7	B	100	110	Right-handed alpha
Helix 26	AC8	B	111	113	Right-handed 310
Helix 27	AC9	B	128	131	Right-handed 310
Helix 28	AD1	B	132	145	Right-handed alpha
Helix 29	AD2	B	158	162	Right-handed 310
Helix 30	AD3	B	163	169	Right-handed 310
Helix 31	AD4	B	179	195	Right-handed alpha
Helix 32	AD5	B	199	210	Right-handed alpha
Helix 33	AD6	B	213	228	Right-handed alpha
Helix 34	AD7	B	233	245	Right-handed alpha
Helix 35	AD8	B	247	259	Right-handed alpha
Helix 36	AD9	B	260	275	Right-handed alpha
Helix 37	AE1	B	277	298	Right-handed alpha
Helix 38	AE2	B	299	302	Right-handed 310
Helix 39	AE3	B	303	308	Right-handed 310
Helix 40	AE4	B	309	320	Right-handed alpha
Helix 41	AE5	B	321	339	Right-handed alpha
Helix 42	AE6	B	340	342	Right-handed 310
Helix 43	AE7	B	344	358	Right-handed alpha
Helix 44	AE8	C	5	10	Right-handed alpha
Helix 45	AE9	C	14	18	Right-handed 310
Helix 46	AF1	C	21	35	Right-handed alpha
Helix 47	AF2	C	50	63	Right-handed alpha
Helix 48	AF3	C	76	84	Right-handed alpha
Helix 49	AF4	C	100	111	Right-handed alpha
Helix 50	AF5	C	128	131	Right-handed 310
Helix 51	AF6	C	132	145	Right-handed alpha
Helix 52	AF7	C	158	162	Right-handed 310
Helix 53	AF8	C	163	169	Right-handed alpha
Helix 54	AF9	C	179	195	Right-handed alpha
Helix 55	AG1	C	199	211	Right-handed alpha
Helix 56	AG2	C	213	229	Right-handed alpha
Helix 57	AG3	C	233	242	Right-handed alpha
Helix 58	AG4	C	245	258	Right-handed alpha
Helix 59	AG5	C	260	274	Right-handed alpha
Helix 60	AG6	C	277	298	Right-handed alpha
Helix 61	AG7	C	299	302	Right-handed 310
Helix 62	AG8	C	303	307	Right-handed 310
Helix 63	AG9	C	309	320	Right-handed alpha
Helix 64	AH1	C	321	339	Right-handed alpha
Helix 65	AH2	C	340	342	Right-handed 310
Helix 66	AH3	C	344	359	Right-handed alpha
Helix 67	AH4	D	5	10	Right-handed alpha
Helix 68	AH5	D	14	18	Right-handed 310
Helix 69	AH6	D	21	35	Right-handed alpha
Helix 70	AH7	D	50	64	Right-handed alpha
Helix 71	AH8	D	76	84	Right-handed alpha
Helix 72	AH9	D	100	111	Right-handed alpha
Helix 73	AI1	D	128	131	Right-handed 310
Helix 74	AI2	D	132	145	Right-handed alpha
Helix 75	AI3	D	158	162	Right-handed 310
Helix 76	AI4	D	163	170	Right-handed alpha
Helix 77	AI5	D	179	195	Right-handed alpha
Helix 78	AI6	D	199	211	Right-handed alpha
Helix 79	AI7	D	213	228	Right-handed alpha
Helix 80	AI8	D	233	242	Right-handed alpha
Helix 81	AI9	D	245	259	Right-handed alpha
Helix 82	AJ1	D	260	274	Right-handed alpha
Helix 83	AJ2	D	277	298	Right-handed alpha
Helix 84	AJ3	D	299	302	Right-handed 310
Helix 85	AJ4	D	303	308	Right-handed 310
Helix 86	AJ5	D	309	320	Right-handed alpha
Helix 87	AJ6	D	321	339	Right-handed alpha
Helix 88	AJ7	D	340	342	Right-handed 310
Helix 89	AJ8	D	344	357	Right-handed alpha
Helix 90	AJ9	E	6	20	Right-handed alpha
Helix 91	AK1	E	36	49	Right-handed alpha
Helix 92	AK2	E	62	71	Right-handed alpha
Helix 93	AK3	E	89	100	Right-handed alpha
Helix 94	AK4	E	116	120	Right-handed 310
Helix 95	AK5	E	121	134	Right-handed alpha
Helix 96	AK6	E	147	151	Right-handed 310
Helix 97	AK7	E	152	157	Right-handed alpha
Helix 98	AK8	E	168	180	Right-handed alpha
Helix 99	AK9	E	183	194	Right-handed alpha
Helix 100	AL1	E	197	206	Right-handed alpha
Helix 101	AL2	E	208	227	Right-handed alpha
Helix 102	AL3	E	228	231	Right-handed 310
Helix 103	AL4	E	232	237	Right-handed alpha
Helix 104	AL5	E	240	261	Right-handed alpha
Helix 105	AL6	E	270	281	Right-handed alpha
Helix 106	AL7	E	282	303	Right-handed alpha
Helix 107	AL8	E	307	324	Right-handed alpha
Helix 108	AL9	F	7	18	Right-handed alpha
Helix 109	AM1	F	27	30	Right-handed 310
Helix 110	AM2	F	72	82	Right-handed alpha
Helix 111	AM3	F	114	116	Right-handed 310
Helix 112	AM4	F	131	144	Right-handed alpha
Helix 113	AM5	F	152	155	Right-handed 310
Helix 114	AM6	F	197	207	Right-handed alpha
Helix 115	AM7	F	244	248	Right-handed 310
Helix 116	AM8	F	259	274	Right-handed alpha
Helix 117	AM9	F	321	332	Right-handed alpha
Helix 118	AN1	G	7	18	Right-handed alpha
Helix 119	AN2	G	28	32	Right-handed 310
Helix 120	AN3	G	71	81	Right-handed alpha
Helix 121	AN4	G	131	144	Right-handed alpha
Helix 122	AN5	G	152	155	Right-handed 310
Helix 123	AN6	G	197	207	Right-handed alpha
Helix 124	AN7	G	243	248	Right-handed alpha
Helix 125	AN8	G	260	271	Right-handed alpha
Helix 126	AN9	G	272	274	Right-handed 310
Helix 127	AO1	G	321	332	Right-handed alpha
Helix 128	AO2	J	4	13	Right-handed alpha
Helix 129	AO3	J	21	25	Right-handed 310

There are 16 sheets in PDB entry 9OYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	134	139	parallel
Strand 3	A	20	25	parallel
Strand 4	A	108	114	parallel
Strand 5	A	77	83	parallel
Strand 6	A	47	54	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	155	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	231	232	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	J	17	19	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	121	126	parallel
Strand 3	C	150	156	parallel
Strand 4	C	40	44	parallel
Strand 5	C	171	174	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	231	232	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	156	parallel
Strand 4	D	40	44	parallel
Strand 5	D	171	174	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	145	parallel
Strand 4	E	26	30	parallel
Strand 5	E	160	163	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	93	anti-parallel
Strand 4	F	96	101	anti-parallel
Strand 5	F	104	109	anti-parallel
Strand 6	G	301	307	anti-parallel
Strand 7	G	289	295	anti-parallel
Strand 8	G	280	286	anti-parallel
Strand 9	G	315	320	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	F	66	71	anti-parallel
Strand 3	F	32	37	anti-parallel
Strand 4	F	41	47	anti-parallel
Strand 5	F	51	58	anti-parallel
Strand 6	F	230	235	anti-parallel
Strand 7	F	222	226	anti-parallel
Strand 8	F	214	218	anti-parallel
Strand 9	F	126	130	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	309	311	first strand
Strand 2	F	254	257	anti-parallel
Strand 3	F	336	340	anti-parallel
Strand 4	F	348	351	anti-parallel
Strand 5	F	358	361	anti-parallel
Strand 6	F	176	196	anti-parallel
Strand 7	F	157	172	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	289	293	anti-parallel
Strand 3	F	280	286	anti-parallel
Strand 4	F	317	320	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	87	92	anti-parallel
Strand 3	G	97	101	anti-parallel
Strand 4	G	104	108	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	68	first strand
Strand 2	G	35	38	anti-parallel
Strand 3	G	41	47	anti-parallel
Strand 4	G	51	55	anti-parallel
Strand 5	G	230	235	anti-parallel
Strand 6	G	222	226	anti-parallel
Strand 7	G	214	218	anti-parallel
Strand 8	G	126	130	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	196	first strand
Strand 2	G	157	161	anti-parallel
Strand 3	G	164	172	anti-parallel
Strand 4	G	176	188	anti-parallel
Strand 5	G	357	361	anti-parallel
Strand 6	G	347	351	anti-parallel
Strand 7	G	335	340	anti-parallel
Strand 8	G	254	259	anti-parallel
Strand 9	G	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYF