Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OYM entry

There are 10 chains in PDB entry 9OYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 343
B	SER 2	GLU 367
C	SER 2	GLU 369
D	MET 1	PRO 361
E	MET 1	LEU 334
F	MET 1	LEU 366
G	MET 1	LEU 366
H	T 25	C 50
I	G 1	G 20
J	SER 3	ALA 32

There are131 helices in PDB entry 9OYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	15	Right-handed alpha
Helix 3	AA3	A	27	45	Right-handed alpha
Helix 4	AA4	A	60	70	Right-handed alpha
Helix 5	AA5	A	90	102	Right-handed alpha
Helix 6	AA6	A	120	123	Right-handed 310
Helix 7	AA7	A	124	130	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	163	174	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	198	204	Right-handed alpha
Helix 12	AB3	A	213	224	Right-handed alpha
Helix 13	AB4	A	225	240	Right-handed alpha
Helix 14	AB5	A	242	264	Right-handed alpha
Helix 15	AB6	A	268	276	Right-handed alpha
Helix 16	AB7	A	282	293	Right-handed alpha
Helix 17	AB8	A	294	314	Right-handed alpha
Helix 18	AB9	A	319	332	Right-handed alpha
Helix 19	AC1	A	337	343	Right-handed alpha
Helix 20	AC2	B	5	10	Right-handed alpha
Helix 21	AC3	B	14	18	Right-handed 310
Helix 22	AC4	B	21	35	Right-handed alpha
Helix 23	AC5	B	50	63	Right-handed alpha
Helix 24	AC6	B	76	85	Right-handed alpha
Helix 25	AC7	B	96	98	Right-handed 310
Helix 26	AC8	B	100	109	Right-handed alpha
Helix 27	AC9	B	110	113	Right-handed 310
Helix 28	AD1	B	128	131	Right-handed 310
Helix 29	AD2	B	132	145	Right-handed alpha
Helix 30	AD3	B	158	162	Right-handed 310
Helix 31	AD4	B	163	168	Right-handed alpha
Helix 32	AD5	B	179	194	Right-handed alpha
Helix 33	AD6	B	199	211	Right-handed alpha
Helix 34	AD7	B	213	228	Right-handed alpha
Helix 35	AD8	B	233	245	Right-handed alpha
Helix 36	AD9	B	247	258	Right-handed alpha
Helix 37	AE1	B	260	275	Right-handed alpha
Helix 38	AE2	B	277	296	Right-handed alpha
Helix 39	AE3	B	298	302	Right-handed 310
Helix 40	AE4	B	303	307	Right-handed 310
Helix 41	AE5	B	309	320	Right-handed alpha
Helix 42	AE6	B	321	338	Right-handed alpha
Helix 43	AE7	B	339	342	Right-handed 310
Helix 44	AE8	B	344	358	Right-handed alpha
Helix 45	AE9	C	5	10	Right-handed alpha
Helix 46	AF1	C	14	18	Right-handed 310
Helix 47	AF2	C	21	35	Right-handed alpha
Helix 48	AF3	C	50	64	Right-handed alpha
Helix 49	AF4	C	76	84	Right-handed alpha
Helix 50	AF5	C	100	110	Right-handed alpha
Helix 51	AF6	C	128	131	Right-handed 310
Helix 52	AF7	C	132	139	Right-handed alpha
Helix 53	AF8	C	139	145	Right-handed alpha
Helix 54	AF9	C	158	162	Right-handed 310
Helix 55	AG1	C	163	169	Right-handed alpha
Helix 56	AG2	C	179	195	Right-handed alpha
Helix 57	AG3	C	199	211	Right-handed alpha
Helix 58	AG4	C	213	228	Right-handed alpha
Helix 59	AG5	C	233	242	Right-handed alpha
Helix 60	AG6	C	245	258	Right-handed alpha
Helix 61	AG7	C	260	274	Right-handed alpha
Helix 62	AG8	C	277	298	Right-handed alpha
Helix 63	AG9	C	303	307	Right-handed 310
Helix 64	AH1	C	309	320	Right-handed alpha
Helix 65	AH2	C	321	339	Right-handed alpha
Helix 66	AH3	C	340	342	Right-handed 310
Helix 67	AH4	C	344	359	Right-handed alpha
Helix 68	AH5	D	5	10	Right-handed alpha
Helix 69	AH6	D	14	18	Right-handed 310
Helix 70	AH7	D	21	35	Right-handed alpha
Helix 71	AH8	D	50	63	Right-handed alpha
Helix 72	AH9	D	76	84	Right-handed alpha
Helix 73	AI1	D	100	110	Right-handed alpha
Helix 74	AI2	D	128	131	Right-handed 310
Helix 75	AI3	D	132	145	Right-handed alpha
Helix 76	AI4	D	158	162	Right-handed 310
Helix 77	AI5	D	163	170	Right-handed alpha
Helix 78	AI6	D	179	195	Right-handed alpha
Helix 79	AI7	D	199	210	Right-handed alpha
Helix 80	AI8	D	213	228	Right-handed alpha
Helix 81	AI9	D	233	242	Right-handed alpha
Helix 82	AJ1	D	247	258	Right-handed alpha
Helix 83	AJ2	D	260	274	Right-handed alpha
Helix 84	AJ3	D	277	298	Right-handed alpha
Helix 85	AJ4	D	299	302	Right-handed 310
Helix 86	AJ5	D	303	307	Right-handed 310
Helix 87	AJ6	D	309	320	Right-handed alpha
Helix 88	AJ7	D	321	339	Right-handed alpha
Helix 89	AJ8	D	340	342	Right-handed 310
Helix 90	AJ9	D	344	357	Right-handed alpha
Helix 91	AK1	E	4	6	Right-handed 310
Helix 92	AK2	E	7	20	Right-handed alpha
Helix 93	AK3	E	36	50	Right-handed alpha
Helix 94	AK4	E	62	71	Right-handed alpha
Helix 95	AK5	E	89	101	Right-handed alpha
Helix 96	AK6	E	116	120	Right-handed 310
Helix 97	AK7	E	121	134	Right-handed alpha
Helix 98	AK8	E	147	151	Right-handed 310
Helix 99	AK9	E	152	158	Right-handed alpha
Helix 100	AL1	E	168	178	Right-handed alpha
Helix 101	AL2	E	183	194	Right-handed alpha
Helix 102	AL3	E	197	206	Right-handed alpha
Helix 103	AL4	E	208	227	Right-handed alpha
Helix 104	AL5	E	228	231	Right-handed 310
Helix 105	AL6	E	232	237	Right-handed alpha
Helix 106	AL7	E	240	260	Right-handed alpha
Helix 107	AL8	E	270	281	Right-handed alpha
Helix 108	AL9	E	282	303	Right-handed alpha
Helix 109	AM1	E	307	323	Right-handed alpha
Helix 110	AM2	F	7	18	Right-handed alpha
Helix 111	AM3	F	27	30	Right-handed 310
Helix 112	AM4	F	72	82	Right-handed alpha
Helix 113	AM5	F	112	116	Right-handed 310
Helix 114	AM6	F	131	141	Right-handed alpha
Helix 115	AM7	F	142	146	Right-handed 310
Helix 116	AM8	F	196	207	Right-handed alpha
Helix 117	AM9	F	260	273	Right-handed alpha
Helix 118	AN1	F	321	332	Right-handed alpha
Helix 119	AN2	G	7	18	Right-handed alpha
Helix 120	AN3	G	28	30	Right-handed 310
Helix 121	AN4	G	72	82	Right-handed alpha
Helix 122	AN5	G	112	116	Right-handed 310
Helix 123	AN6	G	132	141	Right-handed alpha
Helix 124	AN7	G	142	146	Right-handed 310
Helix 125	AN8	G	152	155	Right-handed 310
Helix 126	AN9	G	197	207	Right-handed alpha
Helix 127	AO1	G	243	247	Right-handed 310
Helix 128	AO2	G	260	271	Right-handed alpha
Helix 129	AO3	G	321	332	Right-handed alpha
Helix 130	AO4	J	4	12	Right-handed alpha
Helix 131	AO5	J	21	25	Right-handed 310

There are 13 sheets in PDB entry 9OYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	78	83	parallel
Strand 3	A	108	114	parallel
Strand 4	A	20	24	parallel
Strand 5	A	134	138	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	156	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	J	17	19	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	121	126	parallel
Strand 3	C	150	155	parallel
Strand 4	C	40	44	parallel
Strand 5	C	171	174	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	156	parallel
Strand 4	D	40	44	parallel
Strand 5	D	171	174	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	145	parallel
Strand 4	E	26	30	parallel
Strand 5	E	160	163	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	87	93	anti-parallel
Strand 3	F	96	101	anti-parallel
Strand 4	F	104	109	anti-parallel
Strand 5	G	301	306	anti-parallel
Strand 6	G	289	295	anti-parallel
Strand 7	G	280	286	anti-parallel
Strand 8	G	315	320	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	41	47	anti-parallel
Strand 4	F	51	58	anti-parallel
Strand 5	F	230	235	anti-parallel
Strand 6	F	222	227	anti-parallel
Strand 7	F	214	218	anti-parallel
Strand 8	F	126	130	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	309	310	first strand
Strand 2	F	254	259	anti-parallel
Strand 3	F	335	340	anti-parallel
Strand 4	F	347	351	anti-parallel
Strand 5	F	357	361	anti-parallel
Strand 6	F	176	195	anti-parallel
Strand 7	F	158	172	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	320	first strand
Strand 2	F	280	286	anti-parallel
Strand 3	F	289	295	anti-parallel
Strand 4	F	301	307	anti-parallel
Strand 5	G	104	109	anti-parallel
Strand 6	G	96	101	anti-parallel
Strand 7	G	87	93	anti-parallel
Strand 8	G	3	6	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	32	38	anti-parallel
Strand 3	G	41	47	anti-parallel
Strand 4	G	51	58	anti-parallel
Strand 5	G	230	235	anti-parallel
Strand 6	G	222	227	anti-parallel
Strand 7	G	213	219	anti-parallel
Strand 8	G	124	131	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	310	first strand
Strand 2	G	254	259	anti-parallel
Strand 3	G	335	340	anti-parallel
Strand 4	G	347	351	anti-parallel
Strand 5	G	357	361	anti-parallel
Strand 6	G	176	196	anti-parallel
Strand 7	G	157	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OYM