Analysis of interatomic Contacts of Structural Units in PDB entry:
9P0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P0C entry

There are 2 chains in PDB entry 9P0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1513SER 1684
B
 HIS 1514PHE 1682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9P0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1616 1618Right-handed 310
Helix 2
AA2
A
1648 1652Right-handed 310
Helix 3
AA3
A
1665 1678Right-handed alpha
Helix 4
AA4
A
1679 1682Right-handed 310
Helix 5
AA5
B
1616 1618Right-handed 310
Helix 6
AA6
B
1648 1652Right-handed 310
Helix 7
AA7
B
1664 1678Right-handed alpha
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There are 4 sheets in PDB entry 9P0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1514 1519first strand
Strand 2
A
1522 1528anti-parallel
Strand 3
A
1542 1546parallel
Strand 4
A
1561 1564parallel
Strand 5
A
1580 1582parallel
Strand 6
A
1598 1601parallel
Strand 7
A
1639 1642parallel
Strand 8
A
1628 1633anti-parallel
Strand 9
A
1620 1625anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1535 1537first strand
Strand 2
A
1553 1555parallel
Strand 3
A
1571 1573parallel
Strand 4
A
1589 1592parallel
Strand 5
A
1610 1613parallel
Strand 6
A
1655 1658parallel
Strand 7
A
1661 1664anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1517 1519first strand
Strand 2
B
1522 1528anti-parallel
Strand 3
B
1542 1546parallel
Strand 4
B
1562 1564parallel
Strand 5
B
1580 1582parallel
Strand 6
B
1598 1601parallel
Strand 7
B
1639 1642parallel
Strand 8
B
1628 1633anti-parallel
Strand 9
B
1620 1625anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1535 1537first strand
Strand 2
B
1553 1555parallel
Strand 3
B
1571 1573parallel
Strand 4
B
1589 1592parallel
Strand 5
B
1610 1613parallel
Strand 6
B
1655 1658parallel
Strand 7
B
1662 1663anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il