Analysis of interatomic Contacts of Structural Units in PDB entry:
9P0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P0F entry

There are 3 chains in PDB entry 9P0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 409GLN 500
B
 GLY 409GLN 500
C
 GLY 409GLN 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9P0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
409 417Right-handed alpha
Helix 2
AA2
A
423 434Right-handed alpha
Helix 3
AA3
A
439 454Right-handed alpha
Helix 4
AA4
A
455 458Right-handed 310
Helix 5
AA5
A
462 480Right-handed alpha
Helix 6
AA6
A
493 499Right-handed alpha
Helix 7
AA7
B
410 417Right-handed alpha
Helix 8
AA8
B
423 434Right-handed alpha
Helix 9
AA9
B
439 454Right-handed alpha
Helix 10
AB1
B
462 480Right-handed alpha
Helix 11
AB2
B
493 499Right-handed alpha
Helix 12
AB3
C
410 417Right-handed alpha
Helix 13
AB4
C
423 434Right-handed alpha
Helix 14
AB5
C
439 454Right-handed alpha
Helix 15
AB6
C
462 480Right-handed alpha
Helix 16
AB7
C
493 499Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9P0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
485 487anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 422first strand
Strand 2
B
485 487anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
420 422first strand
Strand 2
C
485 487anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il