Analysis of interatomic Contacts of Structural Units in PDB entry:
9P0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P0K entry

There are 6 chains in PDB entry 9P0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 39	LEU 336
B	THR 1	SER 72
C	THR 4	PHE 354
D	LEU 4	ASN 340
E	SER 8	ARG 62
F	ASP 4	LYS 249

There are 33 helices in PDB entry 9P0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	81	Right-handed alpha
Helix 2	AA2	A	86	115	Right-handed alpha
Helix 3	AA3	A	119	154	Right-handed alpha
Helix 4	AA4	A	155	163	Right-handed alpha
Helix 5	AA5	A	166	189	Right-handed alpha
Helix 6	AA6	A	208	224	Right-handed alpha
Helix 7	AA7	A	224	245	Right-handed alpha
Helix 8	AA8	A	248	283	Right-handed alpha
Helix 9	AA9	A	289	319	Right-handed alpha
Helix 10	AB1	A	322	335	Right-handed alpha
Helix 11	AB2	B	20	22	Right-handed 310
Helix 12	AB3	B	57	72	Right-handed alpha
Helix 13	AB4	C	6	32	Right-handed alpha
Helix 14	AB5	C	45	54	Right-handed alpha
Helix 15	AB6	C	207	212	Right-handed alpha
Helix 16	AB7	C	213	216	Right-handed 310
Helix 17	AB8	C	227	231	Right-handed 310
Helix 18	AB9	C	242	255	Right-handed alpha
Helix 19	AC1	C	256	260	Right-handed 310
Helix 20	AC2	C	270	281	Right-handed alpha
Helix 21	AC3	C	282	286	Right-handed 310
Helix 22	AC4	C	295	310	Right-handed alpha
Helix 23	AC5	C	325	327	Right-handed 310
Helix 24	AC6	C	329	351	Right-handed alpha
Helix 25	AC7	D	5	26	Right-handed alpha
Helix 26	AC8	D	29	34	Right-handed alpha
Helix 27	AC9	E	9	25	Right-handed alpha
Helix 28	AD1	E	29	46	Right-handed alpha
Helix 29	AD2	F	31	35	Right-handed 310
Helix 30	AD3	F	56	59	Right-handed 310
Helix 31	AD4	F	77	79	Right-handed 310
Helix 32	AD5	F	90	94	Right-handed 310
Helix 33	AD6	F	221	225	Right-handed 310

There are 16 sheets in PDB entry 9P0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	202	205	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	30	first strand
Strand 2	B	40	45	anti-parallel
Strand 3	B	50	52	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	196	200	anti-parallel
Strand 3	C	34	40	parallel
Strand 4	C	220	224	parallel
Strand 5	C	263	268	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	336	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	89	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	175	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	217	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	284	288	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	118	122	parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	36	42	anti-parallel
Strand 5	F	48	54	anti-parallel
Strand 6	F	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	118	122	parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	113	114	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	143	first strand
Strand 2	F	156	162	anti-parallel
Strand 3	F	212	217	anti-parallel
Strand 4	F	204	208	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	187	192	anti-parallel
Strand 3	F	175	180	anti-parallel
Strand 4	F	227	232	anti-parallel
Strand 5	F	239	240	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	187	192	anti-parallel
Strand 3	F	175	180	anti-parallel
Strand 4	F	227	232	anti-parallel
Strand 5	F	244	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P0K