Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P1D entry

There are 8 chains in PDB entry 9P1D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 1076
B	MET 1	ARG 99
E	SER 24	ALA 341
F	LEU 30	ALA 341
G	A 5	G 34
H	T 4	A 32
C	THR 28	ALA 341
D	ALA 35	ALA 341

There are106 helices in PDB entry 9P1D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	38	52	Right-handed alpha
Helix 3	AA3	A	108	123	Right-handed alpha
Helix 4	AA4	A	124	128	Right-handed 310
Helix 5	AA5	A	129	138	Right-handed alpha
Helix 6	AA6	A	148	162	Right-handed alpha
Helix 7	AA7	A	166	176	Right-handed alpha
Helix 8	AA8	A	184	188	Right-handed 310
Helix 9	AA9	A	207	219	Right-handed alpha
Helix 10	AB1	A	230	235	Right-handed alpha
Helix 11	AB2	A	242	247	Right-handed 310
Helix 12	AB3	A	252	260	Right-handed alpha
Helix 13	AB4	A	266	269	Right-handed 310
Helix 14	AB5	A	270	287	Right-handed alpha
Helix 15	AB6	A	290	292	Right-handed 310
Helix 16	AB7	A	293	299	Right-handed alpha
Helix 17	AB8	A	300	321	Right-handed alpha
Helix 18	AB9	A	348	365	Right-handed alpha
Helix 19	AC1	A	366	368	Right-handed 310
Helix 20	AC2	A	369	374	Right-handed alpha
Helix 21	AC3	A	380	385	Right-handed alpha
Helix 22	AC4	A	389	392	Right-handed 310
Helix 23	AC5	A	393	413	Right-handed alpha
Helix 24	AC6	A	425	438	Right-handed alpha
Helix 25	AC7	A	456	468	Right-handed alpha
Helix 26	AC8	A	484	486	Right-handed 310
Helix 27	AC9	A	487	495	Right-handed alpha
Helix 28	AD1	A	499	503	Right-handed 310
Helix 29	AD2	A	523	528	Right-handed alpha
Helix 30	AD3	A	531	539	Right-handed alpha
Helix 31	AD4	A	546	550	Right-handed alpha
Helix 32	AD5	A	550	555	Right-handed alpha
Helix 33	AD6	A	561	571	Right-handed alpha
Helix 34	AD7	A	577	581	Right-handed 310
Helix 35	AD8	A	582	584	Right-handed 310
Helix 36	AD9	A	585	599	Right-handed alpha
Helix 37	AE1	A	611	633	Right-handed alpha
Helix 38	AE2	A	659	679	Right-handed alpha
Helix 39	AE3	A	698	721	Right-handed alpha
Helix 40	AE4	A	739	754	Right-handed alpha
Helix 41	AE5	A	771	786	Right-handed alpha
Helix 42	AE6	A	792	798	Right-handed alpha
Helix 43	AE7	A	799	808	Right-handed alpha
Helix 44	AE8	A	821	826	Right-handed 310
Helix 45	AE9	A	841	852	Right-handed alpha
Helix 46	AF1	A	871	876	Right-handed alpha
Helix 47	AF2	A	898	903	Right-handed alpha
Helix 48	AF3	A	904	909	Right-handed alpha
Helix 49	AF4	A	913	918	Right-handed alpha
Helix 50	AF5	A	928	942	Right-handed alpha
Helix 51	AF6	A	954	959	Right-handed alpha
Helix 52	AF7	A	966	971	Right-handed alpha
Helix 53	AF8	A	1008	1011	Right-handed 310
Helix 54	AF9	A	1029	1042	Right-handed alpha
Helix 55	AG1	A	1044	1053	Right-handed alpha
Helix 56	AG2	B	11	22	Right-handed alpha
Helix 57	AG3	B	38	52	Right-handed alpha
Helix 58	AG4	E	25	29	Right-handed 310
Helix 59	AG5	E	68	70	Right-handed 310
Helix 60	AG6	E	85	94	Right-handed alpha
Helix 61	AG7	E	130	138	Right-handed alpha
Helix 62	AG8	E	142	168	Right-handed alpha
Helix 63	AG9	E	168	175	Right-handed alpha
Helix 64	AH1	E	179	196	Right-handed alpha
Helix 65	AH2	E	199	222	Right-handed alpha
Helix 66	AH3	E	237	262	Right-handed alpha
Helix 67	AH4	E	278	285	Right-handed alpha
Helix 68	AH5	E	291	303	Right-handed alpha
Helix 69	AH6	E	305	321	Right-handed alpha
Helix 70	AH7	E	321	341	Right-handed alpha
Helix 71	AH8	F	58	67	Right-handed 310
Helix 72	AH9	F	85	95	Right-handed alpha
Helix 73	AI1	F	103	106	Right-handed 310
Helix 74	AI2	F	131	138	Right-handed alpha
Helix 75	AI3	F	142	167	Right-handed alpha
Helix 76	AI4	F	168	175	Right-handed alpha
Helix 77	AI5	F	179	196	Right-handed alpha
Helix 78	AI6	F	199	223	Right-handed alpha
Helix 79	AI7	F	230	234	Right-handed 310
Helix 80	AI8	F	237	262	Right-handed alpha
Helix 81	AI9	F	277	303	Right-handed alpha
Helix 82	AJ1	F	305	321	Right-handed alpha
Helix 83	AJ2	F	321	341	Right-handed alpha
Helix 84	AJ3	C	68	72	Right-handed 310
Helix 85	AJ4	C	85	95	Right-handed alpha
Helix 86	AJ5	C	130	142	Right-handed alpha
Helix 87	AJ6	C	142	148	Right-handed alpha
Helix 88	AJ7	C	149	166	Right-handed alpha
Helix 89	AJ8	C	180	195	Right-handed alpha
Helix 90	AJ9	C	199	223	Right-handed alpha
Helix 91	AK1	C	237	262	Right-handed alpha
Helix 92	AK2	C	277	303	Right-handed alpha
Helix 93	AK3	C	305	321	Right-handed alpha
Helix 94	AK4	C	321	341	Right-handed alpha
Helix 95	AK5	D	85	95	Right-handed alpha
Helix 96	AK6	D	103	106	Right-handed 310
Helix 97	AK7	D	131	140	Right-handed alpha
Helix 98	AK8	D	149	164	Right-handed alpha
Helix 99	AK9	D	183	196	Right-handed alpha
Helix 100	AL1	D	199	208	Right-handed alpha
Helix 101	AL2	D	211	220	Right-handed alpha
Helix 102	AL3	D	241	262	Right-handed alpha
Helix 103	AL4	D	277	289	Right-handed alpha
Helix 104	AL5	D	291	300	Right-handed alpha
Helix 105	AL6	D	306	321	Right-handed alpha
Helix 106	AL7	D	321	341	Right-handed alpha

There are 15 sheets in PDB entry 9P1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	58	66	anti-parallel
Strand 5	A	69	77	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	E	62	66	anti-parallel
Strand 3	E	51	57	anti-parallel
Strand 4	E	44	48	anti-parallel
Strand 5	E	82	84	parallel
Strand 6	F	81	84	anti-parallel
Strand 7	F	43	47	parallel
Strand 8	F	52	55	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	345	347	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	604	first strand
Strand 2	A	415	416	parallel
Strand 3	A	642	647	parallel
Strand 4	A	652	657	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	474	477	anti-parallel
Strand 3	A	541	545	parallel
Strand 4	A	446	450	parallel
Strand 5	A	573	576	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	728	734	anti-parallel
Strand 3	A	813	818	parallel
Strand 4	A	760	763	parallel
Strand 5	A	1022	1024	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	837	first strand
Strand 2	A	865	867	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1006	first strand
Strand 2	A	994	999	anti-parallel
Strand 3	A	979	986	anti-parallel
Strand 4	A	1054	1058	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1067	first strand
Strand 2	A	1071	1074	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	58	63	anti-parallel
Strand 5	B	71	77	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	C	62	66	anti-parallel
Strand 3	C	51	57	anti-parallel
Strand 4	C	43	48	anti-parallel
Strand 5	C	81	84	parallel
Strand 6	D	81	84	anti-parallel
Strand 7	D	43	45	parallel
Strand 8	D	55	56	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	72	77	parallel
Strand 3	E	98	101	parallel
Strand 4	E	118	123	anti-parallel
Strand 5	F	108	111	anti-parallel
Strand 6	F	97	101	anti-parallel
Strand 7	F	74	77	parallel
Strand 8	F	37	40	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	111	first strand
Strand 2	E	114	116	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	74	77	parallel
Strand 3	C	97	100	parallel
Strand 4	C	119	123	anti-parallel
Strand 5	D	108	111	anti-parallel
Strand 6	D	99	101	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	51	52	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P1D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1D