Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P1H entry

There are 4 chains in PDB entry 9P1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 69GLN 329
B
 PHE 6GLU 67
D
 PHE 6SER 66
C
 SER 69LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9P1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 89Right-handed 310
Helix 2
AA2
A
90 103Right-handed alpha
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
129 139Right-handed alpha
Helix 5
AA5
A
185 190Right-handed alpha
Helix 6
AA6
A
191 193Right-handed 310
Helix 7
AA7
A
199 207Right-handed alpha
Helix 8
AA8
A
264 276Right-handed alpha
Helix 9
AA9
B
31 35Right-handed 310
Helix 10
AB1
B
36 46Right-handed alpha
Helix 11
AB2
D
31 35Right-handed 310
Helix 12
AB3
D
36 47Right-handed alpha
Helix 13
AB4
C
86 89Right-handed 310
Helix 14
AB5
C
90 103Right-handed alpha
Helix 15
AB6
C
119 123Right-handed 310
Helix 16
AB7
C
129 139Right-handed alpha
Helix 17
AB8
C
185 190Right-handed alpha
Helix 18
AB9
C
191 193Right-handed 310
Helix 19
AC1
C
199 207Right-handed alpha
Helix 20
AC2
C
247 250Right-handed 310
Helix 21
AC3
C
264 276Right-handed alpha
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There are 3 sheets in PDB entry 9P1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 150first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
106 115anti-parallel
Strand 4
B
12 19anti-parallel
Strand 5
A
76 81anti-parallel
Strand 6
A
69 73anti-parallel
Strand 7
B
60 66anti-parallel
Strand 8
B
50 56anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 222first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
239 245anti-parallel
Strand 4
A
252 257anti-parallel
Strand 5
A
175 182anti-parallel
Strand 6
A
279 287anti-parallel
Strand 7
A
318 327anti-parallel
Strand 8
A
305 315anti-parallel
Strand 9
C
305 315anti-parallel
Strand 10
C
318 327anti-parallel
Strand 11
C
279 287anti-parallel
Strand 12
C
175 182anti-parallel
Strand 13
C
252 257anti-parallel
Strand 14
C
239 245anti-parallel
Strand 15
C
228 233anti-parallel
Strand 16
C
217 222anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 56first strand
Strand 2
D
60 65anti-parallel
Strand 3
C
69 73anti-parallel
Strand 4
C
76 81anti-parallel
Strand 5
D
12 19anti-parallel
Strand 6
C
106 115anti-parallel
Strand 7
C
156 162anti-parallel
Strand 8
C
144 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il