Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P1M entry

There are 6 chains in PDB entry 9P1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 27	SER 549
B	TRP 27	SER 549
C	ASP 1	ARG 211
D	GLU 1	LYS 224
E	ASP 1	SER 208
F	GLU 1	VAL 221

There are 48 helices in PDB entry 9P1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	60	75	Right-handed alpha
Helix 3	AA3	A	90	97	Right-handed alpha
Helix 4	AA4	A	98	109	Right-handed alpha
Helix 5	AA5	A	116	121	Right-handed 310
Helix 6	AA6	A	124	129	Right-handed alpha
Helix 7	AA7	A	148	155	Right-handed alpha
Helix 8	AA8	A	180	185	Right-handed alpha
Helix 9	AA9	A	195	210	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	317	337	Right-handed alpha
Helix 12	AB3	A	349	354	Right-handed alpha
Helix 13	AB4	A	358	374	Right-handed alpha
Helix 14	AB5	A	392	394	Right-handed 310
Helix 15	AB6	A	408	415	Right-handed alpha
Helix 16	AB7	A	428	439	Right-handed alpha
Helix 17	AB8	A	499	503	Right-handed alpha
Helix 18	AB9	A	508	513	Right-handed alpha
Helix 19	AC1	A	523	535	Right-handed alpha
Helix 20	AC2	B	53	57	Right-handed 310
Helix 21	AC3	B	60	75	Right-handed alpha
Helix 22	AC4	B	90	97	Right-handed alpha
Helix 23	AC5	B	98	108	Right-handed alpha
Helix 24	AC6	B	117	121	Right-handed 310
Helix 25	AC7	B	122	129	Right-handed alpha
Helix 26	AC8	B	149	155	Right-handed alpha
Helix 27	AC9	B	180	185	Right-handed alpha
Helix 28	AD1	B	195	210	Right-handed alpha
Helix 29	AD2	B	222	233	Right-handed alpha
Helix 30	AD3	B	317	336	Right-handed alpha
Helix 31	AD4	B	349	354	Right-handed alpha
Helix 32	AD5	B	358	375	Right-handed alpha
Helix 33	AD6	B	378	382	Right-handed 310
Helix 34	AD7	B	392	394	Right-handed 310
Helix 35	AD8	B	408	415	Right-handed alpha
Helix 36	AD9	B	428	439	Right-handed alpha
Helix 37	AE1	B	499	503	Right-handed alpha
Helix 38	AE2	B	508	514	Right-handed alpha
Helix 39	AE3	B	523	535	Right-handed alpha
Helix 40	AE4	C	79	83	Right-handed 310
Helix 41	AE5	C	121	127	Right-handed alpha
Helix 42	AE6	C	183	187	Right-handed alpha
Helix 43	AE7	D	28	32	Right-handed 310
Helix 44	AE8	D	87	91	Right-handed 310
Helix 45	AE9	D	166	168	Right-handed 310
Helix 46	AF1	D	197	199	Right-handed 310
Helix 47	AF2	E	79	83	Right-handed 310
Helix 48	AF3	F	28	32	Right-handed 310

There are 33 sheets in PDB entry 9P1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	112	114	parallel
Strand 3	A	78	82	parallel
Strand 4	A	28	34	parallel
Strand 5	A	286	294	anti-parallel
Strand 6	A	300	309	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	191	193	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	169	177	anti-parallel
Strand 3	A	215	220	parallel
Strand 4	A	238	240	parallel
Strand 5	A	274	278	parallel
Strand 6	A	265	268	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	338	342	anti-parallel
Strand 3	A	537	538	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	386	390	anti-parallel
Strand 3	A	492	498	parallel
Strand 4	A	421	427	anti-parallel
Strand 5	A	518	519	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	469	475	anti-parallel
Strand 3	A	455	459	anti-parallel
Strand 4	A	546	548	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	112	114	parallel
Strand 3	B	78	82	parallel
Strand 4	B	28	34	parallel
Strand 5	B	286	294	anti-parallel
Strand 6	B	300	305	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	112	114	parallel
Strand 3	B	78	82	parallel
Strand 4	B	28	34	parallel
Strand 5	B	286	294	anti-parallel
Strand 6	B	308	309	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	191	193	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	169	177	anti-parallel
Strand 3	B	215	220	parallel
Strand 4	B	238	240	parallel
Strand 5	B	274	278	parallel
Strand 6	B	265	268	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	338	342	anti-parallel
Strand 3	B	537	538	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	492	498	parallel
Strand 4	B	421	427	anti-parallel
Strand 5	B	517	519	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	469	475	anti-parallel
Strand 3	B	455	459	anti-parallel
Strand 4	B	546	548	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	144	150	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	205	207	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	69	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	110	113	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	186	195	anti-parallel
Strand 4	D	173	175	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	186	195	anti-parallel
Strand 4	D	179	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	204	210	anti-parallel
Strand 3	D	215	221	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	50	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	133	139	anti-parallel
Strand 3	E	173	178	anti-parallel
Strand 4	E	160	163	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	194	197	anti-parallel
Strand 3	E	205	207	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	117	121	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	117	121	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	110	113	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	134	first strand
Strand 2	F	146	155	anti-parallel
Strand 3	F	186	194	anti-parallel
Strand 4	F	174	175	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	134	first strand
Strand 2	F	146	155	anti-parallel
Strand 3	F	186	194	anti-parallel
Strand 4	F	179	180	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	206	210	anti-parallel
Strand 3	F	215	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1M