Analysis of interatomic Contacts of Structural Units in PDB entry:
9P1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P1R entry

There is 1 chain in PDB entry 9P1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ASP 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9P1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
42 57Right-handed alpha
Helix 4
AA4
A
105 115Right-handed alpha
Helix 5
AA5
A
129 136Right-handed alpha
Helix 6
AA6
A
142 147Right-handed alpha
Helix 7
AA7
A
148 151Right-handed 310
Helix 8
AA8
A
173 181Right-handed alpha
Helix 9
AA9
A
212 214Right-handed 310
Helix 10
AB1
A
215 230Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
257 272Right-handed alpha
Helix 13
AB4
A
284 296Right-handed alpha
Helix 14
AB5
A
318 330Right-handed alpha
Helix 15
AB6
A
347 351Right-handed 310
Helix 16
AB7
A
375 377Right-handed 310
Helix 17
AB8
A
378 394Right-handed alpha
Helix 18
AB9
A
395 397Right-handed 310
Helix 19
AC1
A
412 419Right-handed alpha
Helix 20
AC2
A
421 433Right-handed alpha
Helix 21
AC3
A
450 456Right-handed alpha
Helix 22
AC4
A
459 469Right-handed alpha
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There are 5 sheets in PDB entry 9P1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
79 82parallel
Strand 4
A
60 63parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
190 196anti-parallel
Strand 4
A
153 159anti-parallel
Strand 5
A
165 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
199 200anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 283first strand
Strand 2
A
203 211anti-parallel
Strand 3
A
248 254anti-parallel
Strand 4
A
234 240anti-parallel
Strand 5
A
338 343anti-parallel
Strand 6
A
365 373anti-parallel
Strand 7
A
305 313anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
472 473parallel
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