Analysis of interatomic Contacts of Structural Units in PDB entry:
9P38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P38 entry

There are 18 chains in PDB entry 9P38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 3	C 2925
D	THR 2	SER 208
E	PRO 2	LEU 206
J	THR 4	GLY 145
K	MET 1	ILE 122
L	MET 1	ILE 146
N	SER 2	VAL 120
P	GLN 5	ARG 118
Q	PRO 2	ASN 118
R	TYR 2	ALA 102
S	GLN 2	LYS 110
T	MET 1	PHE 93
U	HIS 2	LEU 101
Z	ALA 2	GLN 59
b	ALA 2	CYS 46
Y	MET 1	ASN 65
d	MET 1	ALA 44
B	MET 1	ARG 195

There are 67 helices in PDB entry 9P38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	40	45	Right-handed alpha
Helix 2	AA2	D	57	61	Right-handed 310
Helix 3	AA3	D	62	69	Right-handed alpha
Helix 4	AA4	D	98	102	Right-handed 310
Helix 5	AA5	D	121	126	Right-handed alpha
Helix 6	AA6	E	20	25	Right-handed alpha
Helix 7	AA7	E	29	42	Right-handed alpha
Helix 8	AA8	E	102	120	Right-handed alpha
Helix 9	AA9	E	135	146	Right-handed alpha
Helix 10	AB1	E	160	166	Right-handed alpha
Helix 11	AB2	E	179	181	Right-handed 310
Helix 12	AB3	E	182	189	Right-handed alpha
Helix 13	AB4	E	196	206	Right-handed alpha
Helix 14	AB5	J	25	39	Right-handed alpha
Helix 15	AB6	J	59	63	Right-handed 310
Helix 16	AB7	J	68	73	Right-handed alpha
Helix 17	AB8	J	90	97	Right-handed alpha
Helix 18	AB9	J	97	109	Right-handed alpha
Helix 19	AC1	J	113	122	Right-handed alpha
Helix 20	AC2	J	133	137	Right-handed 310
Helix 21	AC3	K	105	108	Right-handed 310
Helix 22	AC4	K	111	117	Right-handed alpha
Helix 23	AC5	L	79	83	Right-handed alpha
Helix 24	AC6	L	92	100	Right-handed alpha
Helix 25	AC7	L	129	140	Right-handed alpha
Helix 26	AC8	N	9	28	Right-handed alpha
Helix 27	AC9	N	34	54	Right-handed alpha
Helix 28	AD1	N	55	64	Right-handed alpha
Helix 29	AD2	N	79	86	Right-handed alpha
Helix 30	AD3	N	86	91	Right-handed alpha
Helix 31	AD4	P	6	13	Right-handed alpha
Helix 32	AD5	P	14	16	Right-handed 310
Helix 33	AD6	P	56	59	Right-handed 310
Helix 34	AD7	P	100	105	Right-handed 310
Helix 35	AD8	P	108	113	Right-handed alpha
Helix 36	AD9	P	114	116	Right-handed 310
Helix 37	AE1	Q	7	21	Right-handed alpha
Helix 38	AE2	Q	25	30	Right-handed 310
Helix 39	AE3	Q	31	71	Right-handed alpha
Helix 40	AE4	Q	75	85	Right-handed alpha
Helix 41	AE5	Q	86	91	Right-handed 310
Helix 42	AE6	Q	93	102	Right-handed alpha
Helix 43	AE7	Q	103	105	Right-handed 310
Helix 44	AE8	Q	106	117	Right-handed alpha
Helix 45	AE9	S	13	25	Right-handed alpha
Helix 46	AF1	S	28	39	Right-handed alpha
Helix 47	AF2	S	43	61	Right-handed alpha
Helix 48	AF3	T	3	6	Right-handed 310
Helix 49	AF4	T	14	22	Right-handed alpha
Helix 50	AF5	T	35	48	Right-handed alpha
Helix 51	AF6	Z	16	27	Right-handed alpha
Helix 52	AF7	Z	40	50	Right-handed alpha
Helix 53	AF8	b	9	17	Right-handed alpha
Helix 54	AF9	Y	2	9	Right-handed alpha
Helix 55	AG1	Y	10	35	Right-handed alpha
Helix 56	AG2	Y	40	65	Right-handed alpha
Helix 57	AG3	d	9	17	Right-handed alpha
Helix 58	AG4	d	17	22	Right-handed alpha
Helix 59	AG5	d	24	38	Right-handed alpha
Helix 60	AG6	B	14	18	Right-handed 310
Helix 61	AG7	B	36	44	Right-handed alpha
Helix 62	AG8	B	85	102	Right-handed alpha
Helix 63	AG9	B	120	133	Right-handed alpha
Helix 64	AH1	B	143	147	Right-handed 310
Helix 65	AH2	B	148	150	Right-handed 310
Helix 66	AH3	B	151	163	Right-handed alpha
Helix 67	AH4	B	181	195	Right-handed alpha

There are 27 sheets in PDB entry 9P38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	16	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	107	113	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	4	16	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	84	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	162	164	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	3	7	anti-parallel
Strand 3	E	123	126	parallel
Strand 4	E	191	195	parallel
Strand 5	E	152	156	parallel
Strand 6	E	173	177	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	125	first strand
Strand 2	J	54	58	parallel
Strand 3	J	16	20	parallel
Strand 4	J	139	140	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	78	first strand
Strand 2	J	85	89	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	93	first strand
Strand 2	K	83	88	anti-parallel
Strand 3	K	57	64	anti-parallel
Strand 4	K	38	46	anti-parallel
Strand 5	K	16	24	anti-parallel
Strand 6	K	7	10	anti-parallel
Strand 7	K	83	88	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	79	first strand
Strand 2	P	71	78	anti-parallel
Strand 3	P	61	68	anti-parallel
Strand 4	P	42	52	anti-parallel
Strand 5	P	28	35	anti-parallel
Strand 6	P	89	91	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	103	first strand
Strand 2	K	121	122	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	78	first strand
Strand 2	L	110	112	parallel
Strand 3	L	127	128	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	125	first strand
Strand 2	L	143	145	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	33	first strand
Strand 2	N	113	119	anti-parallel
Strand 3	N	99	106	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	72	first strand
Strand 2	N	77	78	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	3	6	anti-parallel
Strand 3	R	38	41	anti-parallel
Strand 4	R	47	48	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	91	97	anti-parallel
Strand 3	R	58	67	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	77	first strand
Strand 2	R	82	88	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	10	first strand
Strand 2	S	101	109	anti-parallel
Strand 3	S	69	78	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	84	first strand
Strand 2	S	96	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	8	11	first strand
Strand 2	T	25	30	anti-parallel
Strand 3	T	76	83	anti-parallel
Strand 4	T	51	59	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	63	66	first strand
Strand 2	T	69	72	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	63	64	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	20	27	anti-parallel
Strand 4	U	8	11	anti-parallel
Strand 5	U	68	70	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	41	first strand
Strand 2	U	59	60	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	44	45	first strand
Strand 2	U	55	56	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	81	85	first strand
Strand 2	U	90	94	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	37	first strand
Strand 2	Z	4	8	anti-parallel
Strand 3	Z	54	58	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	29	first strand
Strand 2	b	36	38	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	12	first strand
Strand 2	B	62	67	anti-parallel
Strand 3	B	71	75	anti-parallel
Strand 4	B	25	30	parallel
Strand 5	B	106	114	parallel
Strand 6	B	137	142	parallel
Strand 7	B	171	173	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P38

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P38