Analysis of interatomic Contacts of Structural Units in PDB entry:
9P3K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P3K entry

There are 2 chains in PDB entry 9P3K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 89	VAL 454
B	TYR 119	VAL 376

There are124 helices in PDB entry 9P3K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	97	Right-handed 310
Helix 2	AA2	A	98	102	Right-handed 310
Helix 3	AA3	A	126	138	Right-handed alpha
Helix 4	AA4	A	167	187	Right-handed alpha
Helix 5	AA5	A	202	205	Right-handed 310
Helix 6	AA6	A	206	218	Right-handed alpha
Helix 7	AA7	A	242	246	Right-handed 310
Helix 8	AA8	A	255	261	Right-handed alpha
Helix 9	AA9	A	264	268	Right-handed 310
Helix 10	AB1	A	278	289	Right-handed alpha
Helix 11	AB2	A	290	292	Right-handed 310
Helix 12	AB3	A	295	309	Right-handed alpha
Helix 13	AB4	A	318	329	Right-handed alpha
Helix 14	AB5	A	330	335	Right-handed alpha
Helix 15	AB6	A	349	354	Right-handed alpha
Helix 16	AB7	A	356	364	Right-handed alpha
Helix 17	AB8	A	392	414	Right-handed alpha
Helix 18	AB9	A	436	440	Right-handed 310
Helix 19	AC1	B	127	139	Right-handed alpha
Helix 20	AC2	B	165	187	Right-handed alpha
Helix 21	AC3	B	202	205	Right-handed 310
Helix 22	AC4	B	206	218	Right-handed alpha
Helix 23	AC5	B	241	246	Right-handed 310
Helix 24	AC6	B	255	261	Right-handed alpha
Helix 25	AC7	B	278	289	Right-handed alpha
Helix 26	AC8	B	290	292	Right-handed 310
Helix 27	AC9	B	295	309	Right-handed alpha
Helix 28	AD1	B	318	329	Right-handed alpha
Helix 29	AD2	B	330	335	Right-handed alpha
Helix 30	AD3	B	351	355	Right-handed 310
Helix 31	AD4	B	356	364	Right-handed alpha
Helix 32	AD5	B	392	413	Right-handed alpha
Helix 33	AD6	B	437	444	Right-handed alpha
Helix 34	AD7	C	98	102	Right-handed 310
Helix 35	AD8	C	126	138	Right-handed alpha
Helix 36	AD9	C	167	187	Right-handed alpha
Helix 37	AE1	C	202	205	Right-handed 310
Helix 38	AE2	C	206	218	Right-handed alpha
Helix 39	AE3	C	242	246	Right-handed 310
Helix 40	AE4	C	255	261	Right-handed alpha
Helix 41	AE5	C	278	289	Right-handed alpha
Helix 42	AE6	C	290	292	Right-handed 310
Helix 43	AE7	C	295	309	Right-handed alpha
Helix 44	AE8	C	318	329	Right-handed alpha
Helix 45	AE9	C	330	335	Right-handed alpha
Helix 46	AF1	C	350	354	Right-handed alpha
Helix 47	AF2	C	356	364	Right-handed alpha
Helix 48	AF3	C	392	416	Right-handed alpha
Helix 49	AF4	C	449	453	Right-handed 310
Helix 50	AF5	D	127	139	Right-handed alpha
Helix 51	AF6	D	165	187	Right-handed alpha
Helix 52	AF7	D	202	205	Right-handed 310
Helix 53	AF8	D	206	218	Right-handed alpha
Helix 54	AF9	D	241	246	Right-handed 310
Helix 55	AG1	D	255	261	Right-handed alpha
Helix 56	AG2	D	278	289	Right-handed alpha
Helix 57	AG3	D	290	292	Right-handed 310
Helix 58	AG4	D	295	309	Right-handed alpha
Helix 59	AG5	D	318	329	Right-handed alpha
Helix 60	AG6	D	330	335	Right-handed alpha
Helix 61	AG7	D	349	354	Right-handed alpha
Helix 62	AG8	D	356	364	Right-handed alpha
Helix 63	AG9	D	392	413	Right-handed alpha
Helix 64	AH1	D	437	445	Right-handed alpha
Helix 65	AH2	E	98	102	Right-handed 310
Helix 66	AH3	E	126	138	Right-handed alpha
Helix 67	AH4	E	167	186	Right-handed alpha
Helix 68	AH5	E	202	205	Right-handed 310
Helix 69	AH6	E	206	218	Right-handed alpha
Helix 70	AH7	E	241	246	Right-handed 310
Helix 71	AH8	E	255	261	Right-handed alpha
Helix 72	AH9	E	278	289	Right-handed alpha
Helix 73	AI1	E	295	306	Right-handed alpha
Helix 74	AI2	E	318	330	Right-handed alpha
Helix 75	AI3	E	330	335	Right-handed alpha
Helix 76	AI4	E	349	354	Right-handed alpha
Helix 77	AI5	E	356	364	Right-handed alpha
Helix 78	AI6	E	392	414	Right-handed alpha
Helix 79	AI7	F	127	139	Right-handed alpha
Helix 80	AI8	F	165	187	Right-handed alpha
Helix 81	AI9	F	202	205	Right-handed 310
Helix 82	AJ1	F	206	218	Right-handed alpha
Helix 83	AJ2	F	241	246	Right-handed 310
Helix 84	AJ3	F	255	260	Right-handed alpha
Helix 85	AJ4	F	278	289	Right-handed alpha
Helix 86	AJ5	F	290	292	Right-handed 310
Helix 87	AJ6	F	295	309	Right-handed alpha
Helix 88	AJ7	F	318	329	Right-handed alpha
Helix 89	AJ8	F	330	335	Right-handed alpha
Helix 90	AJ9	F	350	354	Right-handed alpha
Helix 91	AK1	F	356	364	Right-handed alpha
Helix 92	AK2	F	392	412	Right-handed alpha
Helix 93	AK3	F	437	445	Right-handed alpha
Helix 94	AK4	G	93	97	Right-handed 310
Helix 95	AK5	G	98	102	Right-handed 310
Helix 96	AK6	G	126	138	Right-handed alpha
Helix 97	AK7	G	167	187	Right-handed alpha
Helix 98	AK8	G	202	205	Right-handed 310
Helix 99	AK9	G	206	218	Right-handed alpha
Helix 100	AL1	G	242	246	Right-handed 310
Helix 101	AL2	G	255	261	Right-handed alpha
Helix 102	AL3	G	278	289	Right-handed alpha
Helix 103	AL4	G	290	292	Right-handed 310
Helix 104	AL5	G	295	308	Right-handed alpha
Helix 105	AL6	G	318	329	Right-handed alpha
Helix 106	AL7	G	330	335	Right-handed alpha
Helix 107	AL8	G	349	354	Right-handed alpha
Helix 108	AL9	G	356	364	Right-handed alpha
Helix 109	AM1	G	393	413	Right-handed alpha
Helix 110	AM2	H	127	139	Right-handed alpha
Helix 111	AM3	H	165	187	Right-handed alpha
Helix 112	AM4	H	202	205	Right-handed 310
Helix 113	AM5	H	206	218	Right-handed alpha
Helix 114	AM6	H	241	246	Right-handed 310
Helix 115	AM7	H	255	261	Right-handed alpha
Helix 116	AM8	H	278	289	Right-handed alpha
Helix 117	AM9	H	290	292	Right-handed 310
Helix 118	AN1	H	295	309	Right-handed alpha
Helix 119	AN2	H	318	329	Right-handed alpha
Helix 120	AN3	H	330	335	Right-handed alpha
Helix 121	AN4	H	349	355	Right-handed alpha
Helix 122	AN5	H	356	364	Right-handed alpha
Helix 123	AN6	H	392	416	Right-handed alpha
Helix 124	AN7	H	437	445	Right-handed alpha

There are 32 sheets in PDB entry 9P3K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	149	150	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	152	157	parallel
Strand 3	A	223	227	parallel
Strand 4	A	272	276	anti-parallel
Strand 5	A	250	252	anti-parallel
Strand 6	A	338	340	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	376	378	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	419	first strand
Strand 2	A	427	429	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	149	150	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	152	157	parallel
Strand 3	B	223	227	parallel
Strand 4	B	268	276	anti-parallel
Strand 5	B	250	254	anti-parallel
Strand 6	B	338	341	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	376	378	anti-parallel
Strand 3	B	348	349	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	427	429	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	193	first strand
Strand 2	C	152	157	parallel
Strand 3	C	223	227	parallel
Strand 4	C	272	276	anti-parallel
Strand 5	C	250	253	anti-parallel
Strand 6	C	338	341	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	376	378	anti-parallel
Strand 3	C	348	349	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	419	first strand
Strand 2	C	427	429	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	149	150	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	193	first strand
Strand 2	D	152	157	parallel
Strand 3	D	223	227	parallel
Strand 4	D	268	276	anti-parallel
Strand 5	D	250	254	anti-parallel
Strand 6	D	338	341	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	D	376	378	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	428	429	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	149	150	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	193	first strand
Strand 2	E	152	157	parallel
Strand 3	E	223	227	parallel
Strand 4	E	268	276	anti-parallel
Strand 5	E	250	254	anti-parallel
Strand 6	E	338	341	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	233	first strand
Strand 2	E	376	377	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	417	419	first strand
Strand 2	E	427	429	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	146	first strand
Strand 2	F	149	150	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	193	first strand
Strand 2	F	152	157	parallel
Strand 3	F	223	227	parallel
Strand 4	F	268	276	anti-parallel
Strand 5	F	250	254	anti-parallel
Strand 6	F	338	341	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	233	first strand
Strand 2	F	376	378	anti-parallel
Strand 3	F	348	349	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	417	419	first strand
Strand 2	F	427	429	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	146	first strand
Strand 2	G	149	150	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	157	first strand
Strand 2	G	189	193	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	227	first strand
Strand 2	G	268	276	anti-parallel
Strand 3	G	250	254	anti-parallel
Strand 4	G	338	341	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	231	233	first strand
Strand 2	G	376	378	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	417	419	first strand
Strand 2	G	427	429	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	146	first strand
Strand 2	H	149	150	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	189	193	first strand
Strand 2	H	152	157	parallel
Strand 3	H	223	227	parallel
Strand 4	H	268	276	anti-parallel
Strand 5	H	250	254	anti-parallel
Strand 6	H	338	341	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	231	233	first strand
Strand 2	H	376	378	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	417	419	first strand
Strand 2	H	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P3K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P3K