Analysis of interatomic Contacts of Structural Units in PDB entry:
9P4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P4Q entry

There are 2 chains in PDB entry 9P4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 219LEU 743
R
 ASN 405ASN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9P4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
269 273Right-handed 310
Helix 2
AA2
A
288 292Right-handed 310
Helix 3
AA3
A
294 304Right-handed alpha
Helix 4
AA4
A
396 400Right-handed 310
Helix 5
AA5
A
470 474Right-handed 310
Helix 6
AA6
A
492 496Right-handed 310
Helix 7
AA7
A
554 556Right-handed 310
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There are 14 sheets in PDB entry 9P4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
238 249anti-parallel
Strand 3
A
680 695anti-parallel
Strand 4
A
307 328anti-parallel
Strand 5
A
371 373first strand
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
307 328anti-parallel
Strand 3
A
680 695anti-parallel
Strand 4
A
238 249anti-parallel
Strand 5
A
411 416first strand
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
275 283anti-parallel
Strand 3
A
376 380anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
275 283anti-parallel
Strand 3
A
654 658anti-parallel
Strand 4
A
342 346anti-parallel
Strand 5
A
403 405anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
740 741parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 451first strand
Strand 2
A
459 465anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
605 606anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
534 536anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
514 517anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
558 560anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 581first strand
Strand 2
A
600 602anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
645 647parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
418 419first strand
Strand 2
R
486 495parallel
Strand 3
R
471 481anti-parallel
Strand 4
R
439 448anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
425 429first strand
Strand 2
R
462 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il