Analysis of interatomic Contacts of Structural Units in PDB entry:
9P4S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P4S entry

There is 1 chain in PDB entry 9P4S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 164ARG 1405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9P4S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 195Right-handed alpha
Helix 2
AA2
A
214 225Right-handed alpha
Helix 3
AA3
A
237 245Right-handed alpha
Helix 4
AA4
A
258 269Right-handed alpha
Helix 5
AA5
A
282 287Right-handed alpha
Helix 6
AA6
A
294 301Right-handed alpha
Helix 7
AA7
A
303 307Right-handed 310
Helix 8
AA8
A
331 348Right-handed alpha
Helix 9
AA9
A
352 356Right-handed 310
Helix 10
AB1
A
377 393Right-handed alpha
Helix 11
AB2
A
402 414Right-handed alpha
Helix 12
AB3
A
421 430Right-handed alpha
Helix 13
AB4
A
438 450Right-handed alpha
Helix 14
AB5
A
451 463Right-handed alpha
Helix 15
AB6
A
513 526Right-handed alpha
Helix 16
AB7
A
540 544Right-handed 310
Helix 17
AB8
A
555 562Right-handed alpha
Helix 18
AB9
A
574 585Right-handed alpha
Helix 19
AC1
A
606 618Right-handed alpha
Helix 20
AC2
A
625 638Right-handed alpha
Helix 21
AC3
A
639 645Right-handed alpha
Helix 22
AC4
A
655 671Right-handed alpha
Helix 23
AC5
A
686 713Right-handed alpha
Helix 24
AC6
A
717 723Right-handed alpha
Helix 25
AC7
A
723 732Right-handed alpha
Helix 26
AC8
A
732 745Right-handed alpha
Helix 27
AC9
A
746 749Right-handed 310
Helix 28
AD1
A
750 759Right-handed alpha
Helix 29
AD2
A
761 776Right-handed alpha
Helix 30
AD3
A
900 919Right-handed alpha
Helix 31
AD4
A
919 943Right-handed alpha
Helix 32
AD5
A
958 962Right-handed 310
Helix 33
AD6
A
972 976Right-handed 310
Helix 34
AD7
A
978 1000Right-handed alpha
Helix 35
AD8
A
1014 1021Right-handed alpha
Helix 36
AD9
A
1022 1033Right-handed alpha
Helix 37
AE1
A
1051 1056Right-handed alpha
Helix 38
AE2
A
1067 1074Right-handed alpha
Helix 39
AE3
A
1075 1090Right-handed alpha
Helix 40
AE4
A
1098 1114Right-handed alpha
Helix 41
AE5
A
1117 1125Right-handed alpha
Helix 42
AE6
A
1132 1136Right-handed 310
Helix 43
AE7
A
1141 1146Right-handed alpha
Helix 44
AE8
A
1147 1151Right-handed 310
Helix 45
AE9
A
1153 1165Right-handed alpha
Helix 46
AF1
A
1181 1187Right-handed alpha
Helix 47
AF2
A
1207 1226Right-handed alpha
Helix 48
AF3
A
1247 1258Right-handed alpha
Helix 49
AF4
A
1261 1269Right-handed alpha
Helix 50
AF5
A
1272 1293Right-handed alpha
Helix 51
AF6
A
1294 1297Right-handed 310
Helix 52
AF7
A
1298 1310Right-handed alpha
Helix 53
AF8
A
1317 1326Right-handed alpha
Helix 54
AF9
A
1326 1343Right-handed alpha
Helix 55
AG1
A
1349 1368Right-handed alpha
Helix 56
AG2
A
1372 1377Right-handed alpha
Helix 57
AG3
A
1378 1388Right-handed alpha
Helix 58
AG4
A
1390 1403Right-handed alpha
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There are 8 sheets in PDB entry 9P4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
204 209parallel
Strand 5
A
248 252parallel
Strand 6
A
271 273parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
314 320parallel
Strand 3
A
326 330anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
487 491anti-parallel
Strand 3
A
358 362parallel
Strand 4
A
531 534parallel
Strand 5
A
566 571parallel
Strand 6
A
588 592parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
477 479anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 599first strand
Strand 2
A
673 675anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 950first strand
Strand 2
A
967 968parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1178first strand
Strand 2
A
1167 1168anti-parallel
Strand 3
A
1129 1131anti-parallel
Strand 4
A
1061 1066parallel
Strand 5
A
1007 1012parallel
Strand 6
A
1192 1197parallel
Strand 7
A
1230 1238parallel
Strand 8
A
1241 1246anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1034 1038first strand
Strand 2
A
1044 1049anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il