Analysis of interatomic Contacts of Structural Units in PDB entry:
9P52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P52 entry

There are 5 chains in PDB entry 9P52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	PHE 239
C	MET 1	GLN 32
F	MET 1	LEU 356
G	GLY 5	LYS 359
H	ALA 2	ARG 240

There are 40 helices in PDB entry 9P52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	51	Right-handed alpha
Helix 2	AA2	B	71	79	Right-handed alpha
Helix 3	AA3	B	94	104	Right-handed alpha
Helix 4	AA4	B	110	125	Right-handed alpha
Helix 5	AA5	B	139	154	Right-handed alpha
Helix 6	AA6	B	169	186	Right-handed alpha
Helix 7	AA7	B	199	204	Right-handed alpha
Helix 8	AA8	B	220	225	Right-handed alpha
Helix 9	AA9	B	227	232	Right-handed alpha
Helix 10	AB1	C	2	28	Right-handed alpha
Helix 11	AB2	F	2	41	Right-handed alpha
Helix 12	AB3	F	44	55	Right-handed alpha
Helix 13	AB4	F	55	82	Right-handed alpha
Helix 14	AB5	F	83	91	Right-handed alpha
Helix 15	AB6	F	94	119	Right-handed alpha
Helix 16	AB7	F	119	137	Right-handed alpha
Helix 17	AB8	F	250	256	Right-handed alpha
Helix 18	AB9	F	259	287	Right-handed alpha
Helix 19	AC1	F	293	322	Right-handed alpha
Helix 20	AC2	F	326	348	Right-handed alpha
Helix 21	AC3	F	350	355	Right-handed alpha
Helix 22	AC4	G	6	40	Right-handed alpha
Helix 23	AC5	G	48	86	Right-handed alpha
Helix 24	AC6	G	87	95	Right-handed alpha
Helix 25	AC7	G	98	123	Right-handed alpha
Helix 26	AC8	G	123	142	Right-handed alpha
Helix 27	AC9	G	250	265	Right-handed alpha
Helix 28	AD1	G	268	298	Right-handed alpha
Helix 29	AD2	G	304	333	Right-handed alpha
Helix 30	AD3	G	336	358	Right-handed alpha
Helix 31	AD4	H	41	51	Right-handed alpha
Helix 32	AD5	H	71	79	Right-handed alpha
Helix 33	AD6	H	94	106	Right-handed alpha
Helix 34	AD7	H	110	125	Right-handed alpha
Helix 35	AD8	H	127	131	Right-handed 310
Helix 36	AD9	H	145	154	Right-handed alpha
Helix 37	AE1	H	169	186	Right-handed alpha
Helix 38	AE2	H	196	204	Right-handed alpha
Helix 39	AE3	H	220	226	Right-handed alpha
Helix 40	AE4	H	229	234	Right-handed alpha

There are 4 sheets in PDB entry 9P52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	27	first strand
Strand 2	B	3	13	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	157	162	parallel
Strand 3	B	190	193	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	209	parallel
Strand 6	B	217	219	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	27	first strand
Strand 2	H	3	11	anti-parallel
Strand 3	H	59	62	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	158	162	parallel
Strand 3	H	189	193	parallel
Strand 4	H	31	35	parallel
Strand 5	H	206	211	parallel
Strand 6	H	214	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P52

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P52