Analysis of interatomic Contacts of Structural Units in PDB entry:
9P54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P54 entry

There are 4 chains in PDB entry 9P54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LEU 16SER 210
D
 ILE 15SER 210
c
 SER 15ARG 192
d
 SER 15ARG 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9P54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
31 39Right-handed alpha
Helix 2
AA2
C
49 67Right-handed alpha
Helix 3
AA3
C
82 96Right-handed alpha
Helix 4
AA4
C
110 119Right-handed alpha
Helix 5
AA5
C
150 173Right-handed alpha
Helix 6
AA6
C
175 185Right-handed alpha
Helix 7
AA7
C
191 197Right-handed alpha
Helix 8
AA8
D
31 39Right-handed alpha
Helix 9
AA9
D
50 67Right-handed alpha
Helix 10
AB1
D
82 96Right-handed alpha
Helix 11
AB2
D
109 118Right-handed alpha
Helix 12
AB3
D
152 173Right-handed alpha
Helix 13
AB4
D
175 185Right-handed alpha
Helix 14
AB5
D
191 198Right-handed alpha
Helix 15
AB6
c
16 26Right-handed alpha
Helix 16
AB7
c
37 53Right-handed alpha
Helix 17
AB8
c
70 84Right-handed alpha
Helix 18
AB9
c
98 106Right-handed alpha
Helix 19
AC1
c
132 159Right-handed alpha
Helix 20
AC2
c
161 172Right-handed alpha
Helix 21
AC3
c
176 184Right-handed alpha
Helix 22
AC4
d
16 26Right-handed alpha
Helix 23
AC5
d
37 53Right-handed alpha
Helix 24
AC6
d
70 84Right-handed alpha
Helix 25
AC7
d
98 106Right-handed alpha
Helix 26
AC8
d
133 159Right-handed alpha
Helix 27
AC9
d
161 172Right-handed alpha
Helix 28
AD1
d
176 184Right-handed alpha
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There are 8 sheets in PDB entry 9P54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
72 78parallel
Strand 3
C
100 109parallel
Strand 4
C
131 133parallel
Strand 5
C
188 190anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
72 78parallel
Strand 3
C
100 109parallel
Strand 4
C
124 126parallel
Strand 5
C
202 203parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 44first strand
Strand 2
D
72 76parallel
Strand 3
D
100 104parallel
Strand 4
D
125 126parallel
Strand 5
D
202 203parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 108first strand
Strand 2
D
131 133parallel
Strand 3
D
188 190anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
29 32first strand
Strand 2
c
60 66parallel
Strand 3
c
88 97parallel
Strand 4
c
119 121parallel
Strand 5
c
174 175anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
29 32first strand
Strand 2
c
60 66parallel
Strand 3
c
88 97parallel
Strand 4
c
112 114parallel
Strand 5
c
188 189parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
29 32first strand
Strand 2
d
60 66parallel
Strand 3
d
88 97parallel
Strand 4
d
119 121parallel
Strand 5
d
174 175anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
29 32first strand
Strand 2
d
60 66parallel
Strand 3
d
88 97parallel
Strand 4
d
112 114parallel
Strand 5
d
188 189parallel
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