Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P6H entry

There are 2 chains in PDB entry 9P6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 50LYS 303
B
 GLU 34LYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9P6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 61Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
100 111Right-handed alpha
Helix 4
AA4
A
127 131Right-handed 310
Helix 5
AA5
A
133 141Right-handed alpha
Helix 6
AA6
A
201 205Right-handed 310
Helix 7
AA7
A
216 224Right-handed alpha
Helix 8
AA8
A
241 247Right-handed alpha
Helix 9
AA9
A
271 294Right-handed alpha
Helix 10
AB1
B
67 71Right-handed 310
Helix 11
AB2
B
92 114Right-handed alpha
Helix 12
AB3
B
151 160Right-handed alpha
Helix 13
AB4
B
192 196Right-handed 310
Helix 14
AB5
B
198 203Right-handed 310
Helix 15
AB6
B
242 245Right-handed 310
Helix 16
AB7
B
259 264Right-handed alpha
Helix 17
AB8
B
270 277Right-handed alpha
Helix 18
AB9
B
280 284Right-handed 310
Helix 19
AC1
B
292 311Right-handed alpha
Helix 20
AC2
B
326 335Right-handed alpha
Helix 21
AC3
B
407 412Right-handed alpha
Helix 22
AC4
B
428 431Right-handed 310
Helix 23
AC5
B
444 449Right-handed alpha
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There are 9 sheets in PDB entry 9P6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
186 196anti-parallel
Strand 4
A
170 179anti-parallel
Strand 5
A
71 79anti-parallel
Strand 6
A
254 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
239 240anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
470 472anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
77 81anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
133 138anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
171 173anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
247 253anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 225first strand
Strand 2
B
231 239anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 457first strand
Strand 2
B
433 437anti-parallel
Strand 3
B
397 403anti-parallel
Strand 4
B
465 466parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il