Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P6P entry

There are 6 chains in PDB entry 9P6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASN 298
B
 THR 12GLN 139
C
 ALA 0ASN 297
D
 CYS 17GLU 135
E
 A 1 U 3
G
 A 1 U 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9P6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 6Right-handed 310
Helix 2
AA2
A
12 17Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
79 89Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
133 138Right-handed 310
Helix 7
AA7
A
148 160Right-handed alpha
Helix 8
AA8
A
177 185Right-handed alpha
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
220 235Right-handed alpha
Helix 11
AB2
A
241 246Right-handed 310
Helix 12
AB3
A
268 277Right-handed alpha
Helix 13
AB4
B
13 19Right-handed alpha
Helix 14
AB5
B
22 33Right-handed alpha
Helix 15
AB6
B
71 73Right-handed 310
Helix 16
AB7
B
74 79Right-handed alpha
Helix 17
AB8
B
85 89Right-handed 310
Helix 18
AB9
B
102 104Right-handed 310
Helix 19
AC1
B
106 114Right-handed alpha
Helix 20
AC2
C
2 6Right-handed 310
Helix 21
AC3
C
12 17Right-handed alpha
Helix 22
AC4
C
41 55Right-handed alpha
Helix 23
AC5
C
79 89Right-handed alpha
Helix 24
AC6
C
114 116Right-handed 310
Helix 25
AC7
C
133 138Right-handed 310
Helix 26
AC8
C
148 160Right-handed alpha
Helix 27
AC9
C
177 184Right-handed alpha
Helix 28
AD1
C
197 199Right-handed 310
Helix 29
AD2
C
220 235Right-handed alpha
Helix 30
AD3
C
241 246Right-handed 310
Helix 31
AD4
C
263 267Right-handed 310
Helix 32
AD5
C
268 277Right-handed alpha
Helix 33
AD6
D
22 33Right-handed alpha
Helix 34
AD7
D
71 73Right-handed 310
Helix 35
AD8
D
74 80Right-handed alpha
Helix 36
AD9
D
102 104Right-handed 310
Helix 37
AE1
D
106 114Right-handed alpha
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There are 8 sheets in PDB entry 9P6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
187 195anti-parallel
Strand 3
A
204 211anti-parallel
Strand 4
A
161 171anti-parallel
Strand 5
A
124 129parallel
Strand 6
A
66 70parallel
Strand 7
A
94 99parallel
Strand 8
A
109 112parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
288 292anti-parallel
Strand 3
C
294 296anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
280 282parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
C
289 292anti-parallel
Strand 3
C
118 120anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
65 69anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
187 195anti-parallel
Strand 3
C
204 211anti-parallel
Strand 4
C
161 171anti-parallel
Strand 5
C
124 129parallel
Strand 6
C
66 70parallel
Strand 7
C
94 99parallel
Strand 8
C
109 112parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 260first strand
Strand 2
C
280 282parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
96 100anti-parallel
Strand 3
D
65 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il