Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P6S entry

There are 3 chains in PDB entry 9P6S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LEU 601
B	ARG 6	GLU 445
C	LEU 1327	THR 1509

There are 17 helices in PDB entry 9P6S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	86	Right-handed alpha
Helix 2	AA2	A	184	189	Right-handed alpha
Helix 3	AA3	A	196	203	Right-handed alpha
Helix 4	AA4	A	223	227	Right-handed 310
Helix 5	AA5	A	254	259	Right-handed alpha
Helix 6	AA6	A	508	513	Right-handed alpha
Helix 7	AA7	B	46	53	Right-handed alpha
Helix 8	AA8	B	132	137	Right-handed 310
Helix 9	AA9	B	138	157	Right-handed alpha
Helix 10	AB1	B	208	218	Right-handed alpha
Helix 11	AB2	B	230	241	Right-handed alpha
Helix 12	AB3	B	241	246	Right-handed alpha
Helix 13	AB4	B	267	272	Right-handed alpha
Helix 14	AB5	B	298	310	Right-handed alpha
Helix 15	AB6	B	321	332	Right-handed alpha
Helix 16	AB7	B	344	358	Right-handed alpha
Helix 17	AB8	B	390	392	Right-handed 310

There are 21 sheets in PDB entry 9P6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	442	446	anti-parallel
Strand 3	A	432	437	anti-parallel
Strand 4	A	419	423	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	68	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	120	122	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	217	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	247	252	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	272	277	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	340	343	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	318	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	393	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	542	550	anti-parallel
Strand 3	A	481	492	anti-parallel
Strand 4	A	451	460	anti-parallel
Strand 5	A	585	586	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	536	first strand
Strand 2	A	498	507	anti-parallel
Strand 3	A	563	568	anti-parallel
Strand 4	A	593	598	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	434	440	parallel
Strand 4	B	421	428	anti-parallel
Strand 5	B	360	365	anti-parallel
Strand 6	B	394	398	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	116	first strand
Strand 2	B	403	411	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	385	388	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	206	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	123	130	parallel
Strand 4	B	251	258	parallel
Strand 5	B	311	317	parallel
Strand 6	B	335	339	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1333	1336	first strand
Strand 2	C	1343	1347	anti-parallel
Strand 3	C	1381	1384	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1371	1376	first strand
Strand 2	C	1356	1363	anti-parallel
Strand 3	C	1392	1401	anti-parallel
Strand 4	C	1404	1405	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1371	1376	first strand
Strand 2	C	1356	1363	anti-parallel
Strand 3	C	1392	1401	anti-parallel
Strand 4	C	1409	1414	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1421	1428	first strand
Strand 2	C	1433	1438	anti-parallel
Strand 3	C	1471	1474	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1461	1466	first strand
Strand 2	C	1446	1453	anti-parallel
Strand 3	C	1482	1490	anti-parallel
Strand 4	C	1503	1508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P6S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6S