Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P6U entry

There are 10 chains in PDB entry 9P6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 345	PRO 559
B	ILE 345	PRO 559
C	ILE 345	PRO 559
D	ILE 345	PRO 559
E	ILE 345	PRO 559
F	ILE 345	PRO 559
G	ILE 345	PRO 559
H	ILE 345	PRO 559
K	ILE 345	PRO 559
L	ILE 345	PRO 559

There are 43 helices in PDB entry 9P6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	361	Right-handed alpha
Helix 2	AA2	A	460	467	Right-handed alpha
Helix 3	AA3	A	525	531	Right-handed alpha
Helix 4	AA4	B	353	361	Right-handed alpha
Helix 5	AA5	B	414	420	Right-handed alpha
Helix 6	AA6	B	460	467	Right-handed alpha
Helix 7	AA7	B	524	530	Right-handed alpha
Helix 8	AA8	B	543	547	Right-handed 310
Helix 9	AA9	B	554	558	Right-handed 310
Helix 10	AB1	C	353	361	Right-handed alpha
Helix 11	AB2	C	414	420	Right-handed alpha
Helix 12	AB3	C	460	466	Right-handed alpha
Helix 13	AB4	C	525	531	Right-handed alpha
Helix 14	AB5	C	543	545	Right-handed 310
Helix 15	AB6	D	353	361	Right-handed alpha
Helix 16	AB7	D	415	420	Right-handed alpha
Helix 17	AB8	D	460	467	Right-handed alpha
Helix 18	AB9	D	525	531	Right-handed alpha
Helix 19	AC1	E	353	361	Right-handed alpha
Helix 20	AC2	E	414	420	Right-handed alpha
Helix 21	AC3	E	460	466	Right-handed alpha
Helix 22	AC4	E	524	530	Right-handed alpha
Helix 23	AC5	F	353	360	Right-handed alpha
Helix 24	AC6	F	414	421	Right-handed alpha
Helix 25	AC7	F	460	467	Right-handed alpha
Helix 26	AC8	F	525	530	Right-handed alpha
Helix 27	AC9	F	543	545	Right-handed 310
Helix 28	AD1	G	353	361	Right-handed alpha
Helix 29	AD2	G	414	419	Right-handed alpha
Helix 30	AD3	G	460	466	Right-handed alpha
Helix 31	AD4	G	525	530	Right-handed alpha
Helix 32	AD5	H	353	361	Right-handed alpha
Helix 33	AD6	H	414	420	Right-handed alpha
Helix 34	AD7	H	460	467	Right-handed alpha
Helix 35	AD8	H	524	530	Right-handed alpha
Helix 36	AD9	H	543	545	Right-handed 310
Helix 37	AE1	K	353	358	Right-handed alpha
Helix 38	AE2	K	414	420	Right-handed alpha
Helix 39	AE3	K	460	465	Right-handed alpha
Helix 40	AE4	K	525	531	Right-handed alpha
Helix 41	AE5	L	353	361	Right-handed alpha
Helix 42	AE6	L	460	467	Right-handed alpha
Helix 43	AE7	L	524	530	Right-handed alpha

There are 54 sheets in PDB entry 9P6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	366	370	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	437	441	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	404	405	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	469	477	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	469	477	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	548	551	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	366	370	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	430	first strand
Strand 2	B	433	441	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	519	523	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	489	first strand
Strand 2	B	534	538	anti-parallel
Strand 3	B	548	552	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	349	first strand
Strand 2	C	367	370	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	412	413	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	383	first strand
Strand 2	C	424	428	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	519	524	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	516	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	534	539	anti-parallel
Strand 3	C	547	552	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	366	370	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	383	first strand
Strand 2	D	424	429	anti-parallel
Strand 3	D	437	441	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	395	first strand
Strand 2	D	408	409	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	469	479	anti-parallel
Strand 3	D	519	524	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	469	479	anti-parallel
Strand 3	D	515	516	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	547	551	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	366	370	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	383	first strand
Strand 2	E	424	429	anti-parallel
Strand 3	E	437	441	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	473	477	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	487	489	first strand
Strand 2	E	534	537	anti-parallel
Strand 3	E	551	552	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	500	502	first strand
Strand 2	E	519	521	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	506	507	first strand
Strand 2	E	515	516	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	365	370	anti-parallel
Strand 3	F	409	411	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	424	430	first strand
Strand 2	F	433	441	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	469	477	anti-parallel
Strand 3	F	515	524	anti-parallel
Strand 4	F	500	507	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	487	490	anti-parallel
Strand 3	F	534	539	anti-parallel
Strand 4	F	547	552	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	350	first strand
Strand 2	G	366	369	anti-parallel
Strand 3	G	407	409	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	363	364	first strand
Strand 2	G	412	413	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	384	first strand
Strand 2	G	424	429	anti-parallel
Strand 3	G	437	441	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	400	first strand
Strand 2	G	404	405	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	456	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	524	anti-parallel
Strand 4	G	500	502	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	456	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	524	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	485	490	anti-parallel
Strand 3	G	534	539	anti-parallel
Strand 4	G	547	552	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	350	first strand
Strand 2	H	366	369	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	380	383	first strand
Strand 2	H	424	428	anti-parallel
Strand 3	H	437	441	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	454	first strand
Strand 2	H	476	477	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	470	473	first strand
Strand 2	H	515	523	anti-parallel
Strand 3	H	500	507	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	485	490	anti-parallel
Strand 3	H	534	539	anti-parallel
Strand 4	H	547	552	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	350	first strand
Strand 2	K	363	369	anti-parallel
Strand 3	K	411	413	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	379	384	first strand
Strand 2	K	424	429	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	477	anti-parallel
Strand 3	K	516	524	anti-parallel
Strand 4	K	500	501	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	487	490	anti-parallel
Strand 3	K	534	539	anti-parallel
Strand 4	K	547	552	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	363	364	first strand
Strand 2	L	412	413	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	369	373	first strand
Strand 2	L	404	407	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	379	384	first strand
Strand 2	L	424	429	anti-parallel
Strand 3	L	437	441	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	455	457	first strand
Strand 2	L	470	475	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	485	489	first strand
Strand 2	L	534	539	anti-parallel
Strand 3	L	550	552	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	506	507	first strand
Strand 2	L	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6U