Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P6X entry

There are 9 chains in PDB entry 9P6X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	HIS 613
B	SER 32	HIS 613
C	SER 32	HIS 613
D	GLN 1	SER 122
E	GLN 1	SER 122
F	GLN 1	SER 122
G	VAL 2	SER 123
H	VAL 2	SER 123
I	VAL 2	SER 123

There are 32 helices in PDB entry 9P6X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	61	Right-handed 310
Helix 2	AA2	A	71	73	Right-handed 310
Helix 3	AA3	A	78	83	Right-handed alpha
Helix 4	AA4	A	249	264	Right-handed alpha
Helix 5	AA5	A	552	576	Right-handed alpha
Helix 6	AA6	A	583	596	Right-handed alpha
Helix 7	AA7	B	59	61	Right-handed 310
Helix 8	AA8	B	69	74	Right-handed 310
Helix 9	AA9	B	78	83	Right-handed alpha
Helix 10	AB1	B	249	264	Right-handed alpha
Helix 11	AB2	B	552	565	Right-handed alpha
Helix 12	AB3	B	565	576	Right-handed alpha
Helix 13	AB4	B	583	597	Right-handed alpha
Helix 14	AB5	C	52	56	Right-handed 310
Helix 15	AB6	C	71	74	Right-handed 310
Helix 16	AB7	C	78	83	Right-handed alpha
Helix 17	AB8	C	249	261	Right-handed alpha
Helix 18	AB9	C	552	565	Right-handed alpha
Helix 19	AC1	C	565	576	Right-handed alpha
Helix 20	AC2	C	583	597	Right-handed alpha
Helix 21	AC3	D	62	65	Right-handed 310
Helix 22	AC4	D	74	77	Right-handed 310
Helix 23	AC5	D	87	91	Right-handed 310
Helix 24	AC6	E	87	91	Right-handed 310
Helix 25	AC7	F	62	65	Right-handed 310
Helix 26	AC8	F	87	91	Right-handed 310
Helix 27	AC9	G	87	91	Right-handed 310
Helix 28	AD1	G	106	110	Right-handed 310
Helix 29	AD2	H	87	91	Right-handed 310
Helix 30	AD3	H	106	110	Right-handed 310
Helix 31	AD4	I	87	91	Right-handed 310
Helix 32	AD5	I	106	110	Right-handed 310

There are 34 sheets in PDB entry 9P6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	98	anti-parallel
Strand 7	A	580	581	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	114	first strand
Strand 2	A	135	144	parallel
Strand 3	A	216	223	parallel
Strand 4	A	231	235	anti-parallel
Strand 5	A	240	243	anti-parallel
Strand 6	A	273	277	parallel
Strand 7	E	102	103	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	544	545	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	182	185	parallel
Strand 4	B	63	66	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	151	154	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	159	161	anti-parallel
Strand 3	B	165	167	anti-parallel
Strand 4	B	96	98	anti-parallel
Strand 5	B	580	581	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	114	first strand
Strand 2	B	135	144	parallel
Strand 3	B	216	223	parallel
Strand 4	B	231	237	anti-parallel
Strand 5	B	240	243	anti-parallel
Strand 6	B	273	277	parallel
Strand 7	D	102	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	519	first strand
Strand 2	B	544	545	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	C	580	581	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	517	519	anti-parallel
Strand 3	C	544	545	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	114	first strand
Strand 2	C	135	144	parallel
Strand 3	C	216	223	parallel
Strand 4	C	231	235	anti-parallel
Strand 5	C	240	243	anti-parallel
Strand 6	C	273	277	parallel
Strand 7	F	102	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	68	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	116	121	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	116	121	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	31	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	116	121	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	18	26	anti-parallel
Strand 3	F	79	83	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	116	121	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	31	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	120	122	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	112	113	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	117	118	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	120	122	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	112	113	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	117	118	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	120	122	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	45	50	anti-parallel
Strand 3	I	32	39	anti-parallel
Strand 4	I	93	100	anti-parallel
Strand 5	I	112	113	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	45	50	anti-parallel
Strand 3	I	32	39	anti-parallel
Strand 4	I	93	100	anti-parallel
Strand 5	I	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P6X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P6X