Analysis of interatomic Contacts of Structural Units in PDB entry:
9P83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P83 entry

There are 5 chains in PDB entry 9P83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASP 59	HIS 373
L	ARG 8	LEU 13
A	SER 6	PHE 354
B	GLU 3	ASN 340
C	SER 8	PHE 61

There are 26 helices in PDB entry 9P83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	59	90	Right-handed alpha
Helix 2	AA2	R	98	116	Right-handed alpha
Helix 3	AA3	R	119	126	Right-handed alpha
Helix 4	AA4	R	137	172	Right-handed alpha
Helix 5	AA5	R	172	179	Right-handed alpha
Helix 6	AA6	R	181	200	Right-handed alpha
Helix 7	AA7	R	200	207	Right-handed alpha
Helix 8	AA8	R	229	244	Right-handed alpha
Helix 9	AA9	R	245	269	Right-handed alpha
Helix 10	AB1	R	292	329	Right-handed alpha
Helix 11	AB2	R	335	356	Right-handed alpha
Helix 12	AB3	R	359	368	Right-handed alpha
Helix 13	AB4	R	368	373	Right-handed alpha
Helix 14	AB5	A	7	33	Right-handed alpha
Helix 15	AB6	A	45	53	Right-handed alpha
Helix 16	AB7	A	207	216	Right-handed 310
Helix 17	AB8	A	242	255	Right-handed alpha
Helix 18	AB9	A	256	260	Right-handed 310
Helix 19	AC1	A	270	281	Right-handed alpha
Helix 20	AC2	A	295	311	Right-handed alpha
Helix 21	AC3	A	330	352	Right-handed alpha
Helix 22	AC4	B	4	26	Right-handed alpha
Helix 23	AC5	B	29	35	Right-handed alpha
Helix 24	AC6	C	9	24	Right-handed alpha
Helix 25	AC7	C	29	44	Right-handed alpha
Helix 26	AC8	C	55	59	Right-handed 310

There are 8 sheets in PDB entry 9P83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	320	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	285	287	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	303	306	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	337	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P83

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P83