Analysis of interatomic Contacts of Structural Units in PDB entry:
9P88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P88 entry

There are 5 chains in PDB entry 9P88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
G	ALA 7	ARG 62
A	GLU 14	VAL 359
L	ARG 8	LEU 13
R	SER 51	ILE 374

There are 27 helices in PDB entry 9P88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	B	35	37	Right-handed 310
Helix 4	AA4	G	8	24	Right-handed alpha
Helix 5	AA5	G	29	44	Right-handed alpha
Helix 6	AA6	G	45	48	Right-handed 310
Helix 7	AA7	A	15	38	Right-handed alpha
Helix 8	AA8	A	51	63	Right-handed alpha
Helix 9	AA9	A	212	221	Right-handed 310
Helix 10	AB1	A	233	235	Right-handed 310
Helix 11	AB2	A	246	261	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed 310
Helix 13	AB4	A	275	286	Right-handed alpha
Helix 14	AB5	A	287	291	Right-handed 310
Helix 15	AB6	A	301	316	Right-handed alpha
Helix 16	AB7	A	335	356	Right-handed alpha
Helix 17	AB8	R	59	90	Right-handed alpha
Helix 18	AB9	R	99	118	Right-handed alpha
Helix 19	AC1	R	119	129	Right-handed alpha
Helix 20	AC2	R	137	172	Right-handed alpha
Helix 21	AC3	R	172	179	Right-handed alpha
Helix 22	AC4	R	181	206	Right-handed alpha
Helix 23	AC5	R	229	245	Right-handed alpha
Helix 24	AC6	R	245	270	Right-handed alpha
Helix 25	AC7	R	293	329	Right-handed alpha
Helix 26	AC8	R	335	368	Right-handed alpha
Helix 27	AC9	R	368	374	Right-handed alpha

There are 9 sheets in PDB entry 9P88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	225	231	parallel
Strand 5	A	269	274	parallel
Strand 6	A	324	328	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	207	210	first strand
Strand 2	R	223	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P88

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P88