Analysis of interatomic Contacts of Structural Units in PDB entry:
9P89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P89 entry

There are 5 chains in PDB entry 9P89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 11	VAL 359
B	GLU 3	ASN 340
G	SER 8	ARG 62
L	ARG 9	LEU 13
R	ASP 55	PHE 375

There are 29 helices in PDB entry 9P89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	38	Right-handed alpha
Helix 2	AA2	A	51	63	Right-handed alpha
Helix 3	AA3	A	68	97	Right-handed alpha
Helix 4	AA4	A	103	116	Right-handed alpha
Helix 5	AA5	A	125	138	Right-handed alpha
Helix 6	AA6	A	138	147	Right-handed alpha
Helix 7	AA7	A	157	163	Right-handed alpha
Helix 8	AA8	A	163	169	Right-handed alpha
Helix 9	AA9	A	175	180	Right-handed alpha
Helix 10	AB1	A	246	261	Right-handed alpha
Helix 11	AB2	A	262	265	Right-handed 310
Helix 12	AB3	A	275	286	Right-handed alpha
Helix 13	AB4	A	287	291	Right-handed 310
Helix 14	AB5	A	301	315	Right-handed alpha
Helix 15	AB6	A	333	354	Right-handed alpha
Helix 16	AB7	B	4	26	Right-handed alpha
Helix 17	AB8	B	29	35	Right-handed alpha
Helix 18	AB9	G	9	25	Right-handed alpha
Helix 19	AC1	G	29	44	Right-handed alpha
Helix 20	AC2	R	59	90	Right-handed alpha
Helix 21	AC3	R	98	127	Right-handed alpha
Helix 22	AC4	R	137	172	Right-handed alpha
Helix 23	AC5	R	172	179	Right-handed alpha
Helix 24	AC6	R	181	207	Right-handed alpha
Helix 25	AC7	R	229	245	Right-handed alpha
Helix 26	AC8	R	245	269	Right-handed alpha
Helix 27	AC9	R	294	329	Right-handed alpha
Helix 28	AD1	R	335	368	Right-handed alpha
Helix 29	AD2	R	368	375	Right-handed alpha

There are 12 sheets in PDB entry 9P89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	40	43	parallel
Strand 4	A	225	226	parallel
Strand 5	A	268	274	parallel
Strand 6	A	229	231	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	40	43	parallel
Strand 4	A	225	226	parallel
Strand 5	A	268	274	parallel
Strand 6	A	324	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	51	52	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	329	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	89	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	93	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	296	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	210	211	first strand
Strand 2	R	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P89

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P89