Analysis of interatomic Contacts of Structural Units in PDB entry:
9P8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P8Y entry

There are 4 chains in PDB entry 9P8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 41	LYS 1104
B	LEU 41	LYS 1104
C	LEU 41	LYS 1104
D	LEU 41	LYS 1104

There are200 helices in PDB entry 9P8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	125	135	Right-handed alpha
Helix 3	AA3	A	158	175	Right-handed alpha
Helix 4	AA4	A	186	203	Right-handed alpha
Helix 5	AA5	A	218	220	Right-handed 310
Helix 6	AA6	A	222	227	Right-handed alpha
Helix 7	AA7	A	273	288	Right-handed alpha
Helix 8	AA8	A	309	322	Right-handed alpha
Helix 9	AA9	A	333	343	Right-handed alpha
Helix 10	AB1	A	350	362	Right-handed alpha
Helix 11	AB2	A	362	369	Right-handed alpha
Helix 12	AB3	A	370	387	Right-handed alpha
Helix 13	AB4	A	402	418	Right-handed alpha
Helix 14	AB5	A	420	425	Right-handed alpha
Helix 15	AB6	A	425	437	Right-handed alpha
Helix 16	AB7	A	438	446	Right-handed alpha
Helix 17	AB8	A	454	457	Right-handed 310
Helix 18	AB9	A	458	468	Right-handed alpha
Helix 19	AC1	A	470	479	Right-handed alpha
Helix 20	AC2	A	483	488	Right-handed alpha
Helix 21	AC3	A	489	500	Right-handed alpha
Helix 22	AC4	A	502	516	Right-handed alpha
Helix 23	AC5	A	518	533	Right-handed alpha
Helix 24	AC6	A	559	571	Right-handed alpha
Helix 25	AC7	A	573	582	Right-handed alpha
Helix 26	AC8	A	586	602	Right-handed alpha
Helix 27	AC9	A	607	636	Right-handed alpha
Helix 28	AD1	A	636	646	Right-handed alpha
Helix 29	AD2	A	648	652	Right-handed 310
Helix 30	AD3	A	655	663	Right-handed alpha
Helix 31	AD4	A	665	670	Right-handed alpha
Helix 32	AD5	A	671	684	Right-handed alpha
Helix 33	AD6	A	691	701	Right-handed alpha
Helix 34	AD7	A	702	706	Right-handed 310
Helix 35	AD8	A	723	732	Right-handed alpha
Helix 36	AD9	A	733	758	Right-handed alpha
Helix 37	AE1	A	765	790	Right-handed alpha
Helix 38	AE2	A	791	795	Right-handed 310
Helix 39	AE3	A	796	818	Right-handed alpha
Helix 40	AE4	A	821	853	Right-handed alpha
Helix 41	AE5	A	856	889	Right-handed alpha
Helix 42	AE6	A	895	905	Right-handed alpha
Helix 43	AE7	A	905	913	Right-handed alpha
Helix 44	AE8	A	955	980	Right-handed alpha
Helix 45	AE9	A	981	983	Right-handed 310
Helix 46	AF1	A	989	1007	Right-handed alpha
Helix 47	AF2	A	1012	1014	Right-handed 310
Helix 48	AF3	A	1015	1030	Right-handed alpha
Helix 49	AF4	A	1050	1072	Right-handed alpha
Helix 50	AF5	A	1078	1104	Right-handed alpha
Helix 51	AF6	B	42	49	Right-handed alpha
Helix 52	AF7	B	125	135	Right-handed alpha
Helix 53	AF8	B	158	175	Right-handed alpha
Helix 54	AF9	B	186	203	Right-handed alpha
Helix 55	AG1	B	218	220	Right-handed 310
Helix 56	AG2	B	222	227	Right-handed alpha
Helix 57	AG3	B	273	288	Right-handed alpha
Helix 58	AG4	B	309	322	Right-handed alpha
Helix 59	AG5	B	333	343	Right-handed alpha
Helix 60	AG6	B	350	362	Right-handed alpha
Helix 61	AG7	B	362	369	Right-handed alpha
Helix 62	AG8	B	370	387	Right-handed alpha
Helix 63	AG9	B	402	418	Right-handed alpha
Helix 64	AH1	B	420	425	Right-handed alpha
Helix 65	AH2	B	425	437	Right-handed alpha
Helix 66	AH3	B	438	446	Right-handed alpha
Helix 67	AH4	B	454	457	Right-handed 310
Helix 68	AH5	B	458	468	Right-handed alpha
Helix 69	AH6	B	470	479	Right-handed alpha
Helix 70	AH7	B	483	488	Right-handed alpha
Helix 71	AH8	B	489	500	Right-handed alpha
Helix 72	AH9	B	502	516	Right-handed alpha
Helix 73	AI1	B	518	533	Right-handed alpha
Helix 74	AI2	B	559	571	Right-handed alpha
Helix 75	AI3	B	573	582	Right-handed alpha
Helix 76	AI4	B	586	602	Right-handed alpha
Helix 77	AI5	B	607	636	Right-handed alpha
Helix 78	AI6	B	636	646	Right-handed alpha
Helix 79	AI7	B	648	652	Right-handed 310
Helix 80	AI8	B	655	663	Right-handed alpha
Helix 81	AI9	B	665	670	Right-handed alpha
Helix 82	AJ1	B	671	684	Right-handed alpha
Helix 83	AJ2	B	691	701	Right-handed alpha
Helix 84	AJ3	B	702	706	Right-handed 310
Helix 85	AJ4	B	723	732	Right-handed alpha
Helix 86	AJ5	B	733	758	Right-handed alpha
Helix 87	AJ6	B	765	790	Right-handed alpha
Helix 88	AJ7	B	791	795	Right-handed 310
Helix 89	AJ8	B	796	818	Right-handed alpha
Helix 90	AJ9	B	821	853	Right-handed alpha
Helix 91	AK1	B	856	889	Right-handed alpha
Helix 92	AK2	B	895	905	Right-handed alpha
Helix 93	AK3	B	905	913	Right-handed alpha
Helix 94	AK4	B	955	980	Right-handed alpha
Helix 95	AK5	B	981	983	Right-handed 310
Helix 96	AK6	B	989	1007	Right-handed alpha
Helix 97	AK7	B	1012	1014	Right-handed 310
Helix 98	AK8	B	1015	1030	Right-handed alpha
Helix 99	AK9	B	1050	1072	Right-handed alpha
Helix 100	AL1	B	1078	1104	Right-handed alpha
Helix 101	AL2	C	42	49	Right-handed alpha
Helix 102	AL3	C	125	135	Right-handed alpha
Helix 103	AL4	C	158	175	Right-handed alpha
Helix 104	AL5	C	186	203	Right-handed alpha
Helix 105	AL6	C	218	220	Right-handed 310
Helix 106	AL7	C	222	227	Right-handed alpha
Helix 107	AL8	C	273	288	Right-handed alpha
Helix 108	AL9	C	309	322	Right-handed alpha
Helix 109	AM1	C	333	343	Right-handed alpha
Helix 110	AM2	C	350	362	Right-handed alpha
Helix 111	AM3	C	362	369	Right-handed alpha
Helix 112	AM4	C	370	387	Right-handed alpha
Helix 113	AM5	C	402	418	Right-handed alpha
Helix 114	AM6	C	420	425	Right-handed alpha
Helix 115	AM7	C	425	437	Right-handed alpha
Helix 116	AM8	C	438	446	Right-handed alpha
Helix 117	AM9	C	454	457	Right-handed 310
Helix 118	AN1	C	458	468	Right-handed alpha
Helix 119	AN2	C	470	479	Right-handed alpha
Helix 120	AN3	C	483	488	Right-handed alpha
Helix 121	AN4	C	489	500	Right-handed alpha
Helix 122	AN5	C	502	516	Right-handed alpha
Helix 123	AN6	C	518	533	Right-handed alpha
Helix 124	AN7	C	559	571	Right-handed alpha
Helix 125	AN8	C	573	582	Right-handed alpha
Helix 126	AN9	C	586	602	Right-handed alpha
Helix 127	AO1	C	607	636	Right-handed alpha
Helix 128	AO2	C	636	646	Right-handed alpha
Helix 129	AO3	C	648	652	Right-handed 310
Helix 130	AO4	C	655	663	Right-handed alpha
Helix 131	AO5	C	665	670	Right-handed alpha
Helix 132	AO6	C	671	684	Right-handed alpha
Helix 133	AO7	C	691	701	Right-handed alpha
Helix 134	AO8	C	702	706	Right-handed 310
Helix 135	AO9	C	723	732	Right-handed alpha
Helix 136	AP1	C	733	758	Right-handed alpha
Helix 137	AP2	C	765	790	Right-handed alpha
Helix 138	AP3	C	791	795	Right-handed 310
Helix 139	AP4	C	796	818	Right-handed alpha
Helix 140	AP5	C	821	853	Right-handed alpha
Helix 141	AP6	C	856	889	Right-handed alpha
Helix 142	AP7	C	895	905	Right-handed alpha
Helix 143	AP8	C	905	913	Right-handed alpha
Helix 144	AP9	C	955	980	Right-handed alpha
Helix 145	AQ1	C	981	983	Right-handed 310
Helix 146	AQ2	C	989	1007	Right-handed alpha
Helix 147	AQ3	C	1012	1014	Right-handed 310
Helix 148	AQ4	C	1015	1030	Right-handed alpha
Helix 149	AQ5	C	1050	1072	Right-handed alpha
Helix 150	AQ6	C	1078	1104	Right-handed alpha
Helix 151	AQ7	D	42	49	Right-handed alpha
Helix 152	AQ8	D	125	135	Right-handed alpha
Helix 153	AQ9	D	158	175	Right-handed alpha
Helix 154	AR1	D	186	203	Right-handed alpha
Helix 155	AR2	D	218	220	Right-handed 310
Helix 156	AR3	D	222	227	Right-handed alpha
Helix 157	AR4	D	273	288	Right-handed alpha
Helix 158	AR5	D	309	322	Right-handed alpha
Helix 159	AR6	D	333	343	Right-handed alpha
Helix 160	AR7	D	350	362	Right-handed alpha
Helix 161	AR8	D	362	369	Right-handed alpha
Helix 162	AR9	D	370	387	Right-handed alpha
Helix 163	AS1	D	402	418	Right-handed alpha
Helix 164	AS2	D	420	425	Right-handed alpha
Helix 165	AS3	D	425	437	Right-handed alpha
Helix 166	AS4	D	438	446	Right-handed alpha
Helix 167	AS5	D	454	457	Right-handed 310
Helix 168	AS6	D	458	468	Right-handed alpha
Helix 169	AS7	D	470	479	Right-handed alpha
Helix 170	AS8	D	483	488	Right-handed alpha
Helix 171	AS9	D	489	500	Right-handed alpha
Helix 172	AT1	D	502	516	Right-handed alpha
Helix 173	AT2	D	518	533	Right-handed alpha
Helix 174	AT3	D	559	571	Right-handed alpha
Helix 175	AT4	D	573	582	Right-handed alpha
Helix 176	AT5	D	586	602	Right-handed alpha
Helix 177	AT6	D	607	636	Right-handed alpha
Helix 178	AT7	D	636	646	Right-handed alpha
Helix 179	AT8	D	648	652	Right-handed 310
Helix 180	AT9	D	655	663	Right-handed alpha
Helix 181	AU1	D	665	670	Right-handed alpha
Helix 182	AU2	D	671	684	Right-handed alpha
Helix 183	AU3	D	691	701	Right-handed alpha
Helix 184	AU4	D	702	706	Right-handed 310
Helix 185	AU5	D	723	732	Right-handed alpha
Helix 186	AU6	D	733	758	Right-handed alpha
Helix 187	AU7	D	765	790	Right-handed alpha
Helix 188	AU8	D	791	795	Right-handed 310
Helix 189	AU9	D	796	818	Right-handed alpha
Helix 190	AV1	D	821	853	Right-handed alpha
Helix 191	AV2	D	856	889	Right-handed alpha
Helix 192	AV3	D	895	905	Right-handed alpha
Helix 193	AV4	D	905	913	Right-handed alpha
Helix 194	AV5	D	955	980	Right-handed alpha
Helix 195	AV6	D	981	983	Right-handed 310
Helix 196	AV7	D	989	1007	Right-handed alpha
Helix 197	AV8	D	1012	1014	Right-handed 310
Helix 198	AV9	D	1015	1030	Right-handed alpha
Helix 199	AW1	D	1050	1072	Right-handed alpha
Helix 200	AW2	D	1078	1104	Right-handed alpha

There are 8 sheets in PDB entry 9P8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	97	99	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	103	107	parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	259	264	parallel
Strand 5	A	210	216	parallel
Strand 6	A	177	181	parallel
Strand 7	A	144	149	parallel
Strand 8	A	301	305	parallel
Strand 9	A	326	329	parallel
Strand 10	A	391	394	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	97	99	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	103	107	parallel
Strand 3	B	115	121	anti-parallel
Strand 4	B	259	264	parallel
Strand 5	B	210	216	parallel
Strand 6	B	177	181	parallel
Strand 7	B	144	149	parallel
Strand 8	B	301	305	parallel
Strand 9	B	326	329	parallel
Strand 10	B	391	394	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	97	99	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	103	107	parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	259	264	parallel
Strand 5	C	210	216	parallel
Strand 6	C	177	181	parallel
Strand 7	C	144	149	parallel
Strand 8	C	301	305	parallel
Strand 9	C	326	329	parallel
Strand 10	C	391	394	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	97	99	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	103	107	parallel
Strand 3	D	115	121	anti-parallel
Strand 4	D	259	264	parallel
Strand 5	D	210	216	parallel
Strand 6	D	177	181	parallel
Strand 7	D	144	149	parallel
Strand 8	D	301	305	parallel
Strand 9	D	326	329	parallel
Strand 10	D	391	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P8Y