Analysis of interatomic Contacts of Structural Units in PDB entry:
9P93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P93 entry

There are 6 chains in PDB entry 9P93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	ASN 340
G	SER 8	ARG 62
N	GLN 1	VAL 126
P	HIS 1	ASN 28
R	ASP 24	TRP 418
A	GLN 12	LEU 394

There are 31 helices in PDB entry 9P93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	26	Right-handed alpha
Helix 2	AA2	B	32	36	Right-handed 310
Helix 3	AA3	G	9	25	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	G	55	59	Right-handed 310
Helix 6	AA6	N	62	65	Right-handed 310
Helix 7	AA7	N	87	91	Right-handed 310
Helix 8	AA8	P	2	28	Right-handed alpha
Helix 9	AA9	R	27	41	Right-handed alpha
Helix 10	AB1	R	80	84	Right-handed 310
Helix 11	AB2	R	129	133	Right-handed 310
Helix 12	AB3	R	144	178	Right-handed alpha
Helix 13	AB4	R	183	211	Right-handed alpha
Helix 14	AB5	R	224	257	Right-handed alpha
Helix 15	AB6	R	264	291	Right-handed alpha
Helix 16	AB7	R	302	336	Right-handed alpha
Helix 17	AB8	R	348	363	Right-handed alpha
Helix 18	AB9	R	365	371	Right-handed alpha
Helix 19	AC1	R	377	385	Right-handed alpha
Helix 20	AC2	R	388	390	Right-handed 310
Helix 21	AC3	R	391	400	Right-handed alpha
Helix 22	AC4	R	404	418	Right-handed alpha
Helix 23	AC5	A	13	40	Right-handed alpha
Helix 24	AC6	A	52	60	Right-handed alpha
Helix 25	AC7	A	233	239	Right-handed 310
Helix 26	AC8	A	264	278	Right-handed alpha
Helix 27	AC9	A	280	285	Right-handed 310
Helix 28	AD1	A	293	302	Right-handed alpha
Helix 29	AD2	A	312	316	Right-handed 310
Helix 30	AD3	A	331	351	Right-handed alpha
Helix 31	AD4	A	370	391	Right-handed alpha

There are 12 sheets in PDB entry 9P93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	93	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	73	74	first strand
Strand 2	R	115	116	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	118	119	first strand
Strand 2	R	122	123	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P93

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P93