Analysis of interatomic Contacts of Structural Units in PDB entry:
9P96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P96 entry

There are 2 chains in PDB entry 9P96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1ARG 587
B
 GLY 82LEU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9P96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 144Right-handed 310
Helix 2
AA2
A
184 189Right-handed alpha
Helix 3
AA3
A
241 245Right-handed 310
Helix 4
AA4
A
359 364Right-handed alpha
Helix 5
AA5
A
388 390Right-handed 310
Helix 6
AA6
B
142 144Right-handed 310
Helix 7
AA7
B
145 153Right-handed alpha
Helix 8
AA8
B
154 165Right-handed alpha
Helix 9
AA9
B
189 194Right-handed alpha
Helix 10
AB1
B
219 228Right-handed alpha
Helix 11
AB2
B
242 252Right-handed alpha
Helix 12
AB3
B
252 257Right-handed alpha
Helix 13
AB4
B
277 283Right-handed 310
Helix 14
AB5
B
300 304Right-handed 310
Helix 15
AB6
B
310 321Right-handed alpha
Helix 16
AB7
B
333 342Right-handed alpha
Helix 17
AB8
B
358 373Right-handed alpha
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There are 19 sheets in PDB entry 9P96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
424 428anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
397 405anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
69 71anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
116 117anti-parallel
Strand 3
A
127 128anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
108 111anti-parallel
Strand 3
A
132 135anti-parallel
Strand 4
A
145 147anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
178 182anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
202 204anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
247 253anti-parallel
Strand 3
A
258 260anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
247 253anti-parallel
Strand 3
A
264 265anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
318 325anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
352 356anti-parallel
Strand 3
A
366 373anti-parallel
Strand 4
A
376 377anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
352 356anti-parallel
Strand 3
A
366 373anti-parallel
Strand 4
A
383 386anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
433 436anti-parallel
Strand 3
A
569 570parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
462 467anti-parallel
Strand 3
A
525 531anti-parallel
Strand 4
A
500 501anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
458 460anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 484first strand
Strand 2
A
513 518anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 547first strand
Strand 2
A
578 583anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 88first strand
Strand 2
B
108 113anti-parallel
Strand 3
B
446 453parallel
Strand 4
B
434 440anti-parallel
Strand 5
B
376 378anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
119 126anti-parallel
Strand 3
B
417 426anti-parallel
Strand 4
B
385 388anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
119 126anti-parallel
Strand 3
B
417 426anti-parallel
Strand 4
B
391 392anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 217first strand
Strand 2
B
170 177anti-parallel
Strand 3
B
133 140parallel
Strand 4
B
262 269parallel
Strand 5
B
324 329parallel
Strand 6
B
348 351parallel
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