Analysis of interatomic Contacts of Structural Units in PDB entry:
9P97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P97 entry

There are 4 chains in PDB entry 9P97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LEU 799
B	ARG 81	CYS 455
H	MET 1	PRO 220
L	ALA 1	SER 216

There are 39 helices in PDB entry 9P97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	129	Right-handed 310
Helix 2	AA2	A	196	218	Right-handed alpha
Helix 3	AA3	A	239	242	Right-handed 310
Helix 4	AA4	A	243	253	Right-handed alpha
Helix 5	AA5	A	262	274	Right-handed alpha
Helix 6	AA6	A	276	280	Right-handed 310
Helix 7	AA7	A	303	309	Right-handed alpha
Helix 8	AA8	A	310	314	Right-handed 310
Helix 9	AA9	A	325	328	Right-handed 310
Helix 10	AB1	A	329	340	Right-handed alpha
Helix 11	AB2	A	343	347	Right-handed alpha
Helix 12	AB3	A	355	359	Right-handed 310
Helix 13	AB4	A	360	369	Right-handed alpha
Helix 14	AB5	A	379	384	Right-handed 310
Helix 15	AB6	A	431	438	Right-handed alpha
Helix 16	AB7	A	464	468	Right-handed 310
Helix 17	AB8	A	618	620	Right-handed 310
Helix 18	AB9	A	697	701	Right-handed 310
Helix 19	AC1	A	726	731	Right-handed alpha
Helix 20	AC2	B	142	144	Right-handed 310
Helix 21	AC3	B	145	153	Right-handed alpha
Helix 22	AC4	B	155	164	Right-handed alpha
Helix 23	AC5	B	189	195	Right-handed alpha
Helix 24	AC6	B	219	229	Right-handed alpha
Helix 25	AC7	B	241	252	Right-handed alpha
Helix 26	AC8	B	252	257	Right-handed alpha
Helix 27	AC9	B	277	283	Right-handed 310
Helix 28	AD1	B	300	306	Right-handed 310
Helix 29	AD2	B	310	322	Right-handed alpha
Helix 30	AD3	B	333	344	Right-handed alpha
Helix 31	AD4	B	358	372	Right-handed alpha
Helix 32	AD5	H	63	66	Right-handed 310
Helix 33	AD6	H	88	92	Right-handed 310
Helix 34	AD7	H	135	141	Right-handed 310
Helix 35	AD8	H	164	166	Right-handed 310
Helix 36	AD9	H	208	211	Right-handed 310
Helix 37	AE1	L	87	91	Right-handed 310
Helix 38	AE2	L	130	136	Right-handed alpha
Helix 39	AE3	L	191	196	Right-handed alpha

There are 27 sheets in PDB entry 9P97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	653	658	anti-parallel
Strand 3	A	645	648	anti-parallel
Strand 4	A	631	633	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	26	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	49	54	anti-parallel
Strand 4	A	59	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	85	94	anti-parallel
Strand 3	A	103	111	anti-parallel
Strand 4	A	117	122	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	183	190	parallel
Strand 4	A	286	293	parallel
Strand 5	A	316	323	parallel
Strand 6	A	348	351	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	392	first strand
Strand 2	A	397	402	anti-parallel
Strand 3	A	412	416	anti-parallel
Strand 4	A	421	425	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	456	461	anti-parallel
Strand 3	A	470	477	anti-parallel
Strand 4	A	480	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	513	518	anti-parallel
Strand 3	A	529	535	anti-parallel
Strand 4	A	542	548	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	576	581	anti-parallel
Strand 3	A	596	603	anti-parallel
Strand 4	A	606	607	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	576	581	anti-parallel
Strand 3	A	596	603	anti-parallel
Strand 4	A	613	616	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	662	first strand
Strand 2	A	786	787	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	671	first strand
Strand 2	A	683	691	anti-parallel
Strand 3	A	742	751	anti-parallel
Strand 4	A	722	724	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	735	first strand
Strand 2	A	706	713	anti-parallel
Strand 3	A	765	774	anti-parallel
Strand 4	A	794	799	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	447	453	parallel
Strand 4	B	434	440	anti-parallel
Strand 5	B	373	378	anti-parallel
Strand 6	B	407	410	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	119	126	anti-parallel
Strand 3	B	417	426	anti-parallel
Strand 4	B	385	388	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	119	126	anti-parallel
Strand 3	B	417	426	anti-parallel
Strand 4	B	391	392	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	217	first strand
Strand 2	B	170	177	anti-parallel
Strand 3	B	133	140	parallel
Strand 4	B	262	269	parallel
Strand 5	B	323	329	parallel
Strand 6	B	348	351	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	182	192	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	182	192	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	24	26	anti-parallel
Strand 3	L	78	79	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	111	115	parallel
Strand 3	L	93	98	anti-parallel
Strand 4	L	40	45	anti-parallel
Strand 5	L	52	55	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	82	83	anti-parallel
Strand 3	L	69	70	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	127	first strand
Strand 2	L	138	148	anti-parallel
Strand 3	L	181	190	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	162	164	first strand
Strand 2	L	154	159	anti-parallel
Strand 3	L	200	205	anti-parallel
Strand 4	L	211	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P97

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P97