Analysis of interatomic Contacts of Structural Units in PDB entry:
9P98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P98 entry

There are 4 chains in PDB entry 9P98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LEU 809
B	PRO 80	ASN 458
H	MET 1	PRO 220
L	ALA 1	SER 216

There are 32 helices in PDB entry 9P98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	129	Right-handed 310
Helix 2	AA2	A	196	218	Right-handed alpha
Helix 3	AA3	A	238	242	Right-handed 310
Helix 4	AA4	A	243	254	Right-handed alpha
Helix 5	AA5	A	262	274	Right-handed alpha
Helix 6	AA6	A	303	309	Right-handed alpha
Helix 7	AA7	A	329	340	Right-handed alpha
Helix 8	AA8	A	357	364	Right-handed alpha
Helix 9	AA9	A	431	438	Right-handed alpha
Helix 10	AB1	A	617	621	Right-handed alpha
Helix 11	AB2	A	697	701	Right-handed 310
Helix 12	AB3	A	757	761	Right-handed 310
Helix 13	AB4	B	97	101	Right-handed 310
Helix 14	AB5	B	142	146	Right-handed 310
Helix 15	AB6	B	148	165	Right-handed alpha
Helix 16	AB7	B	189	195	Right-handed alpha
Helix 17	AB8	B	219	230	Right-handed alpha
Helix 18	AB9	B	241	252	Right-handed alpha
Helix 19	AC1	B	252	257	Right-handed alpha
Helix 20	AC2	B	278	283	Right-handed 310
Helix 21	AC3	B	300	306	Right-handed 310
Helix 22	AC4	B	310	322	Right-handed alpha
Helix 23	AC5	B	333	342	Right-handed alpha
Helix 24	AC6	B	356	370	Right-handed alpha
Helix 25	AC7	B	402	407	Right-handed 310
Helix 26	AC8	H	63	66	Right-handed 310
Helix 27	AC9	H	88	92	Right-handed 310
Helix 28	AD1	H	135	141	Right-handed 310
Helix 29	AD2	H	194	196	Right-handed 310
Helix 30	AD3	L	87	91	Right-handed 310
Helix 31	AD4	L	130	136	Right-handed alpha
Helix 32	AD5	L	191	197	Right-handed alpha

There are 26 sheets in PDB entry 9P98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	653	658	anti-parallel
Strand 3	A	645	648	anti-parallel
Strand 4	A	631	633	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	58	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	85	94	anti-parallel
Strand 3	A	103	111	anti-parallel
Strand 4	A	117	122	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	221	227	anti-parallel
Strand 3	A	183	189	parallel
Strand 4	A	286	292	parallel
Strand 5	A	319	320	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	397	401	anti-parallel
Strand 3	A	412	416	anti-parallel
Strand 4	A	421	425	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	456	462	anti-parallel
Strand 3	A	470	474	anti-parallel
Strand 4	A	483	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	513	517	anti-parallel
Strand 3	A	530	535	anti-parallel
Strand 4	A	542	548	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	596	600	anti-parallel
Strand 4	A	613	616	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	662	first strand
Strand 2	A	786	787	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	671	first strand
Strand 2	A	683	691	anti-parallel
Strand 3	A	742	751	anti-parallel
Strand 4	A	722	724	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	735	first strand
Strand 2	A	706	713	anti-parallel
Strand 3	A	765	774	anti-parallel
Strand 4	A	794	799	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	448	453	parallel
Strand 4	B	434	436	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	119	126	anti-parallel
Strand 3	B	418	426	anti-parallel
Strand 4	B	385	392	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	217	first strand
Strand 2	B	170	177	anti-parallel
Strand 3	B	133	140	parallel
Strand 4	B	263	269	parallel
Strand 5	B	323	329	parallel
Strand 6	B	348	351	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	71	74	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	182	192	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	182	192	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	111	115	parallel
Strand 3	L	93	98	anti-parallel
Strand 4	L	40	45	anti-parallel
Strand 5	L	52	55	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	25	first strand
Strand 2	L	78	79	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	82	83	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	127	first strand
Strand 2	L	142	148	anti-parallel
Strand 3	L	181	185	anti-parallel
Strand 4	L	174	175	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	140	first strand
Strand 2	L	188	190	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	162	163	first strand
Strand 2	L	154	159	anti-parallel
Strand 3	L	200	205	anti-parallel
Strand 4	L	211	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P98

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P98