Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P9B entry

There are 8 chains in PDB entry 9P9B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 416	SER 840
B	THR 416	SER 840
C	THR 416	SER 840
D	THR 416	SER 840
H	ARG 6	GLY 210
F	ARG 6	GLY 210
G	ARG 6	GLY 210
E	ARG 6	GLY 210

There are 94 helices in PDB entry 9P9B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	445	459	Right-handed alpha
Helix 2	AA2	A	483	491	Right-handed alpha
Helix 3	AA3	A	506	509	Right-handed 310
Helix 4	AA4	A	537	541	Right-handed 310
Helix 5	AA5	A	544	568	Right-handed alpha
Helix 6	AA6	A	595	607	Right-handed alpha
Helix 7	AA7	A	617	643	Right-handed alpha
Helix 8	AA8	A	657	662	Right-handed alpha
Helix 9	AA9	A	675	684	Right-handed alpha
Helix 10	AB1	A	686	699	Right-handed alpha
Helix 11	AB2	A	707	718	Right-handed alpha
Helix 12	AB3	A	728	737	Right-handed alpha
Helix 13	AB4	A	764	778	Right-handed alpha
Helix 14	AB5	A	779	790	Right-handed alpha
Helix 15	AB6	A	810	813	Right-handed 310
Helix 16	AB7	A	814	840	Right-handed alpha
Helix 17	AB8	B	433	437	Right-handed 310
Helix 18	AB9	B	438	441	Right-handed 310
Helix 19	AC1	B	445	459	Right-handed alpha
Helix 20	AC2	B	483	491	Right-handed alpha
Helix 21	AC3	B	504	509	Right-handed alpha
Helix 22	AC4	B	535	541	Right-handed 310
Helix 23	AC5	B	544	568	Right-handed alpha
Helix 24	AC6	B	595	607	Right-handed alpha
Helix 25	AC7	B	617	646	Right-handed alpha
Helix 26	AC8	B	657	664	Right-handed alpha
Helix 27	AC9	B	675	684	Right-handed alpha
Helix 28	AD1	B	686	699	Right-handed alpha
Helix 29	AD2	B	707	718	Right-handed alpha
Helix 30	AD3	B	728	735	Right-handed alpha
Helix 31	AD4	B	764	778	Right-handed alpha
Helix 32	AD5	B	779	789	Right-handed alpha
Helix 33	AD6	B	790	793	Right-handed 310
Helix 34	AD7	B	810	813	Right-handed 310
Helix 35	AD8	B	814	839	Right-handed alpha
Helix 36	AD9	C	433	437	Right-handed 310
Helix 37	AE1	C	438	443	Right-handed 310
Helix 38	AE2	C	445	459	Right-handed alpha
Helix 39	AE3	C	483	491	Right-handed alpha
Helix 40	AE4	C	504	509	Right-handed alpha
Helix 41	AE5	C	537	541	Right-handed 310
Helix 42	AE6	C	544	566	Right-handed alpha
Helix 43	AE7	C	595	607	Right-handed alpha
Helix 44	AE8	C	617	643	Right-handed alpha
Helix 45	AE9	C	658	663	Right-handed alpha
Helix 46	AF1	C	675	682	Right-handed alpha
Helix 47	AF2	C	686	697	Right-handed alpha
Helix 48	AF3	C	707	718	Right-handed alpha
Helix 49	AF4	C	728	736	Right-handed alpha
Helix 50	AF5	C	764	778	Right-handed alpha
Helix 51	AF6	C	779	789	Right-handed alpha
Helix 52	AF7	C	803	807	Right-handed 310
Helix 53	AF8	C	810	813	Right-handed 310
Helix 54	AF9	C	814	839	Right-handed alpha
Helix 55	AG1	D	433	437	Right-handed 310
Helix 56	AG2	D	439	441	Right-handed 310
Helix 57	AG3	D	445	459	Right-handed alpha
Helix 58	AG4	D	483	491	Right-handed alpha
Helix 59	AG5	D	504	509	Right-handed alpha
Helix 60	AG6	D	535	541	Right-handed 310
Helix 61	AG7	D	544	568	Right-handed alpha
Helix 62	AG8	D	595	607	Right-handed alpha
Helix 63	AG9	D	617	640	Right-handed alpha
Helix 64	AH1	D	657	663	Right-handed alpha
Helix 65	AH2	D	675	684	Right-handed alpha
Helix 66	AH3	D	686	699	Right-handed alpha
Helix 67	AH4	D	707	718	Right-handed alpha
Helix 68	AH5	D	727	735	Right-handed alpha
Helix 69	AH6	D	764	778	Right-handed alpha
Helix 70	AH7	D	779	789	Right-handed alpha
Helix 71	AH8	D	796	803	Right-handed 310
Helix 72	AH9	D	810	813	Right-handed 310
Helix 73	AI1	D	814	840	Right-handed alpha
Helix 74	AI2	H	7	29	Right-handed alpha
Helix 75	AI3	H	95	105	Right-handed alpha
Helix 76	AI4	H	105	125	Right-handed alpha
Helix 77	AI5	H	132	160	Right-handed alpha
Helix 78	AI6	H	177	210	Right-handed alpha
Helix 79	AI7	F	7	30	Right-handed alpha
Helix 80	AI8	F	95	105	Right-handed alpha
Helix 81	AI9	F	105	128	Right-handed alpha
Helix 82	AJ1	F	132	160	Right-handed alpha
Helix 83	AJ2	F	177	207	Right-handed alpha
Helix 84	AJ3	F	208	210	Right-handed 310
Helix 85	AJ4	G	8	30	Right-handed alpha
Helix 86	AJ5	G	95	105	Right-handed alpha
Helix 87	AJ6	G	105	125	Right-handed alpha
Helix 88	AJ7	G	132	160	Right-handed alpha
Helix 89	AJ8	G	177	210	Right-handed alpha
Helix 90	AJ9	E	8	29	Right-handed alpha
Helix 91	AK1	E	95	105	Right-handed alpha
Helix 92	AK2	E	105	123	Right-handed alpha
Helix 93	AK3	E	132	159	Right-handed alpha
Helix 94	AK4	E	177	210	Right-handed alpha

There are 22 sheets in PDB entry 9P9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	462	466	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	757	759	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	752	754	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	722	727	parallel
Strand 3	A	522	527	anti-parallel
Strand 4	A	742	745	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	466	first strand
Strand 2	B	417	421	parallel
Strand 3	B	496	497	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	443	444	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	757	759	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	752	754	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	705	first strand
Strand 2	B	668	672	parallel
Strand 3	B	722	727	parallel
Strand 4	B	522	527	anti-parallel
Strand 5	B	742	745	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	466	first strand
Strand 2	C	417	421	parallel
Strand 3	C	496	497	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	520	first strand
Strand 2	C	752	759	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	704	705	first strand
Strand 2	C	668	672	parallel
Strand 3	C	722	727	parallel
Strand 4	C	522	527	anti-parallel
Strand 5	C	742	745	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	466	first strand
Strand 2	D	417	421	parallel
Strand 3	D	496	497	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	430	first strand
Strand 2	D	443	444	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	520	first strand
Strand 2	D	752	759	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	527	first strand
Strand 2	D	742	745	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	670	first strand
Strand 2	D	722	724	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	69	anti-parallel
Strand 3	H	58	61	anti-parallel
Strand 4	H	34	36	anti-parallel
Strand 5	H	175	176	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	58	61	anti-parallel
Strand 4	G	34	37	anti-parallel
Strand 5	G	175	176	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P9B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9B