Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P9D entry

There are 8 chains in PDB entry 9P9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 416	SER 840
B	THR 416	SER 840
C	THR 416	SER 840
D	THR 416	SER 840
H	ARG 6	GLY 210
F	ARG 6	GLY 210
G	ARG 6	GLY 210
E	ARG 6	GLY 210

There are 95 helices in PDB entry 9P9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	445	459	Right-handed alpha
Helix 2	AA2	A	483	491	Right-handed alpha
Helix 3	AA3	A	504	509	Right-handed alpha
Helix 4	AA4	A	537	541	Right-handed 310
Helix 5	AA5	A	544	549	Right-handed alpha
Helix 6	AA6	A	549	568	Right-handed alpha
Helix 7	AA7	A	594	607	Right-handed alpha
Helix 8	AA8	A	617	646	Right-handed alpha
Helix 9	AA9	A	657	664	Right-handed alpha
Helix 10	AB1	A	675	683	Right-handed alpha
Helix 11	AB2	A	686	697	Right-handed alpha
Helix 12	AB3	A	707	718	Right-handed alpha
Helix 13	AB4	A	728	737	Right-handed alpha
Helix 14	AB5	A	764	778	Right-handed alpha
Helix 15	AB6	A	779	791	Right-handed alpha
Helix 16	AB7	A	810	813	Right-handed 310
Helix 17	AB8	A	814	840	Right-handed alpha
Helix 18	AB9	B	433	437	Right-handed 310
Helix 19	AC1	B	438	441	Right-handed 310
Helix 20	AC2	B	445	459	Right-handed alpha
Helix 21	AC3	B	483	491	Right-handed alpha
Helix 22	AC4	B	504	509	Right-handed alpha
Helix 23	AC5	B	537	541	Right-handed 310
Helix 24	AC6	B	544	568	Right-handed alpha
Helix 25	AC7	B	594	607	Right-handed alpha
Helix 26	AC8	B	617	640	Right-handed alpha
Helix 27	AC9	B	641	648	Right-handed alpha
Helix 28	AD1	B	657	663	Right-handed alpha
Helix 29	AD2	B	675	684	Right-handed alpha
Helix 30	AD3	B	686	699	Right-handed alpha
Helix 31	AD4	B	707	718	Right-handed alpha
Helix 32	AD5	B	728	736	Right-handed alpha
Helix 33	AD6	B	764	778	Right-handed alpha
Helix 34	AD7	B	779	789	Right-handed alpha
Helix 35	AD8	B	810	813	Right-handed 310
Helix 36	AD9	B	814	839	Right-handed alpha
Helix 37	AE1	C	433	437	Right-handed 310
Helix 38	AE2	C	438	441	Right-handed 310
Helix 39	AE3	C	445	459	Right-handed alpha
Helix 40	AE4	C	483	491	Right-handed alpha
Helix 41	AE5	C	504	509	Right-handed alpha
Helix 42	AE6	C	537	541	Right-handed 310
Helix 43	AE7	C	544	566	Right-handed alpha
Helix 44	AE8	C	594	607	Right-handed alpha
Helix 45	AE9	C	617	646	Right-handed alpha
Helix 46	AF1	C	659	664	Right-handed alpha
Helix 47	AF2	C	675	683	Right-handed alpha
Helix 48	AF3	C	686	699	Right-handed alpha
Helix 49	AF4	C	707	719	Right-handed alpha
Helix 50	AF5	C	728	737	Right-handed alpha
Helix 51	AF6	C	764	778	Right-handed alpha
Helix 52	AF7	C	779	789	Right-handed alpha
Helix 53	AF8	C	790	793	Right-handed 310
Helix 54	AF9	C	810	813	Right-handed 310
Helix 55	AG1	C	814	840	Right-handed alpha
Helix 56	AG2	D	433	437	Right-handed 310
Helix 57	AG3	D	439	441	Right-handed 310
Helix 58	AG4	D	445	459	Right-handed alpha
Helix 59	AG5	D	483	491	Right-handed alpha
Helix 60	AG6	D	504	509	Right-handed alpha
Helix 61	AG7	D	537	541	Right-handed 310
Helix 62	AG8	D	544	568	Right-handed alpha
Helix 63	AG9	D	594	607	Right-handed alpha
Helix 64	AH1	D	617	640	Right-handed alpha
Helix 65	AH2	D	641	645	Right-handed 310
Helix 66	AH3	D	657	663	Right-handed alpha
Helix 67	AH4	D	675	684	Right-handed alpha
Helix 68	AH5	D	686	699	Right-handed alpha
Helix 69	AH6	D	707	718	Right-handed alpha
Helix 70	AH7	D	728	737	Right-handed alpha
Helix 71	AH8	D	764	778	Right-handed alpha
Helix 72	AH9	D	779	790	Right-handed alpha
Helix 73	AI1	D	796	800	Right-handed 310
Helix 74	AI2	D	810	839	Right-handed alpha
Helix 75	AI3	H	7	29	Right-handed alpha
Helix 76	AI4	H	95	105	Right-handed alpha
Helix 77	AI5	H	105	125	Right-handed alpha
Helix 78	AI6	H	132	161	Right-handed alpha
Helix 79	AI7	H	177	208	Right-handed alpha
Helix 80	AI8	F	8	30	Right-handed alpha
Helix 81	AI9	F	95	105	Right-handed alpha
Helix 82	AJ1	F	105	125	Right-handed alpha
Helix 83	AJ2	F	132	160	Right-handed alpha
Helix 84	AJ3	F	177	207	Right-handed alpha
Helix 85	AJ4	F	208	210	Right-handed 310
Helix 86	AJ5	G	7	29	Right-handed alpha
Helix 87	AJ6	G	95	105	Right-handed alpha
Helix 88	AJ7	G	105	127	Right-handed alpha
Helix 89	AJ8	G	132	160	Right-handed alpha
Helix 90	AJ9	G	177	207	Right-handed alpha
Helix 91	AK1	E	8	29	Right-handed alpha
Helix 92	AK2	E	95	105	Right-handed alpha
Helix 93	AK3	E	105	125	Right-handed alpha
Helix 94	AK4	E	132	160	Right-handed alpha
Helix 95	AK5	E	177	210	Right-handed alpha

There are 23 sheets in PDB entry 9P9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	466	first strand
Strand 2	A	417	421	parallel
Strand 3	A	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	520	first strand
Strand 2	A	752	759	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	670	first strand
Strand 2	A	722	727	parallel
Strand 3	A	522	527	anti-parallel
Strand 4	A	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	462	466	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	758	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	727	first strand
Strand 2	B	522	527	anti-parallel
Strand 3	B	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	466	first strand
Strand 2	C	417	421	parallel
Strand 3	C	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	513	first strand
Strand 2	C	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	668	670	first strand
Strand 2	C	722	727	parallel
Strand 3	C	522	527	anti-parallel
Strand 4	C	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	466	first strand
Strand 2	D	417	421	parallel
Strand 3	D	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	430	first strand
Strand 2	D	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	513	first strand
Strand 2	D	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	520	first strand
Strand 2	D	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	670	first strand
Strand 2	D	722	727	parallel
Strand 3	D	522	527	anti-parallel
Strand 4	D	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	59	61	anti-parallel
Strand 4	H	34	36	anti-parallel
Strand 5	H	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	G	66	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	175	176	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9D