Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P9S entry

There are 8 chains in PDB entry 9P9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 19	ILE 346
B	GLY 353	MET 521
C	ASP 19	ILE 346
D	GLY 353	MET 521
E	ASP 19	ILE 346
F	GLY 353	MET 521
H	GLU 1	SER 113
L	ASP 1	LYS 107

There are 28 helices in PDB entry 9P9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	80	Right-handed alpha
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	112	122	Right-handed alpha
Helix 4	AA4	A	196	204	Right-handed alpha
Helix 5	AA5	B	386	405	Right-handed alpha
Helix 6	AA6	B	423	476	Right-handed alpha
Helix 7	AA7	B	495	503	Right-handed alpha
Helix 8	AA8	B	511	521	Right-handed alpha
Helix 9	AA9	C	75	80	Right-handed alpha
Helix 10	AB1	C	81	85	Right-handed 310
Helix 11	AB2	C	112	121	Right-handed alpha
Helix 12	AB3	C	144	148	Right-handed 310
Helix 13	AB4	C	196	205	Right-handed alpha
Helix 14	AB5	D	386	405	Right-handed alpha
Helix 15	AB6	D	423	476	Right-handed alpha
Helix 16	AB7	D	477	479	Right-handed 310
Helix 17	AB8	D	494	503	Right-handed alpha
Helix 18	AB9	D	507	510	Right-handed 310
Helix 19	AC1	D	511	521	Right-handed alpha
Helix 20	AC2	E	81	85	Right-handed 310
Helix 21	AC3	E	112	122	Right-handed alpha
Helix 22	AC4	E	196	205	Right-handed alpha
Helix 23	AC5	F	386	405	Right-handed alpha
Helix 24	AC6	F	423	475	Right-handed alpha
Helix 25	AC7	F	494	503	Right-handed alpha
Helix 26	AC8	F	507	510	Right-handed 310
Helix 27	AC9	F	511	520	Right-handed alpha
Helix 28	AD1	L	79	83	Right-handed 310

There are 36 sheets in PDB entry 9P9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	385	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	A	20	23	anti-parallel
Strand 4	B	486	489	anti-parallel
Strand 5	B	479	481	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	42	44	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	334	336	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	313	314	parallel
Strand 3	A	326	327	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	292	293	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	94	96	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	238	246	parallel
Strand 3	A	185	193	anti-parallel
Strand 4	A	260	263	anti-parallel
Strand 5	A	158	160	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	265	266	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	152	153	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	251	256	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	300	302	anti-parallel
Strand 3	A	321	322	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	D	371	373	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	42	44	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	335	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	313	314	parallel
Strand 3	C	326	327	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	291	293	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	286	287	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	238	243	parallel
Strand 3	C	188	193	anti-parallel
Strand 4	C	260	261	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	265	268	anti-parallel
Strand 3	C	185	186	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	251	256	anti-parallel
Strand 3	C	211	215	anti-parallel
Strand 4	C	221	222	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	300	302	anti-parallel
Strand 3	C	321	322	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	376	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	F	486	489	anti-parallel
Strand 4	F	479	481	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	42	44	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	49	first strand
Strand 2	E	334	336	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	313	314	parallel
Strand 3	E	326	327	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	96	97	parallel
Strand 3	E	286	287	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	238	246	parallel
Strand 3	E	185	193	anti-parallel
Strand 4	E	265	269	anti-parallel
Strand 5	E	126	130	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	238	246	parallel
Strand 3	E	185	193	anti-parallel
Strand 4	E	260	263	anti-parallel
Strand 5	E	158	160	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	152	153	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	178	first strand
Strand 2	E	251	256	anti-parallel
Strand 3	E	211	214	anti-parallel
Strand 4	E	219	222	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	301	first strand
Strand 2	E	321	322	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	69	72	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	38	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	38	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	23	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	46	49	anti-parallel
Strand 3	L	33	36	anti-parallel
Strand 4	L	88	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9S