Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9P9U entry

There is 1 chain in PDB entry 9P9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 679GLN 1309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9P9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
684 686Right-handed 310
Helix 2
AA2
A
734 745Right-handed alpha
Helix 3
AA3
A
773 781Right-handed alpha
Helix 4
AA4
A
786 807Right-handed alpha
Helix 5
AA5
A
853 857Right-handed 310
Helix 6
AA6
A
858 863Right-handed alpha
Helix 7
AA7
A
868 885Right-handed alpha
Helix 8
AA8
A
895 897Right-handed 310
Helix 9
AA9
A
898 906Right-handed alpha
Helix 10
AB1
A
916 923Right-handed alpha
Helix 11
AB2
A
936 949Right-handed alpha
Helix 12
AB3
A
950 955Right-handed alpha
Helix 13
AB4
A
1079 1096Right-handed alpha
Helix 14
AB5
A
1124 1132Right-handed alpha
Helix 15
AB6
A
1137 1158Right-handed alpha
Helix 16
AB7
A
1166 1168Right-handed 310
Helix 17
AB8
A
1204 1208Right-handed 310
Helix 18
AB9
A
1209 1214Right-handed alpha
Helix 19
AC1
A
1219 1236Right-handed alpha
Helix 20
AC2
A
1248 1255Right-handed alpha
Helix 21
AC3
A
1267 1277Right-handed alpha
Helix 22
AC4
A
1287 1299Right-handed alpha
Helix 23
AC5
A
1301 1306Right-handed alpha
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There are 6 sheets in PDB entry 9P9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 696first strand
Strand 2
A
701 707anti-parallel
Strand 3
A
716 722anti-parallel
Strand 4
A
762 767anti-parallel
Strand 5
A
755 758anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 823first strand
Strand 2
A
826 829anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1033first strand
Strand 2
A
1104 1108parallel
Strand 3
A
1114 1118anti-parallel
Strand 4
A
1067 1072anti-parallel
Strand 5
A
1052 1058anti-parallel
Strand 6
A
1043 1047anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1161first strand
Strand 2
A
1187 1188anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1170 1174first strand
Strand 2
A
1177 1180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1196 1197first strand
Strand 2
A
1217 1218anti-parallel
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