Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P9V entry

There are 6 chains in PDB entry 9P9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 165	ALA 605
B	PRO 165	ALA 605
C	PRO 165	ALA 605
D	PRO 165	ALA 605
E	PRO 165	ILE 603
F	PRO 166	ILE 603

There are103 helices in PDB entry 9P9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	178	Right-handed alpha
Helix 2	AA2	A	183	200	Right-handed alpha
Helix 3	AA3	A	298	309	Right-handed alpha
Helix 4	AA4	A	334	343	Right-handed alpha
Helix 5	AA5	A	346	352	Right-handed alpha
Helix 6	AA6	A	380	389	Right-handed alpha
Helix 7	AA7	A	411	415	Right-handed 310
Helix 8	AA8	A	425	435	Right-handed alpha
Helix 9	AA9	A	485	491	Right-handed alpha
Helix 10	AB1	A	493	500	Right-handed alpha
Helix 11	AB2	A	510	520	Right-handed alpha
Helix 12	AB3	A	524	535	Right-handed alpha
Helix 13	AB4	A	543	557	Right-handed alpha
Helix 14	AB5	A	559	561	Right-handed 310
Helix 15	AB6	A	562	579	Right-handed alpha
Helix 16	AB7	A	590	595	Right-handed alpha
Helix 17	AB8	B	168	178	Right-handed alpha
Helix 18	AB9	B	183	205	Right-handed alpha
Helix 19	AC1	B	298	308	Right-handed alpha
Helix 20	AC2	B	333	344	Right-handed alpha
Helix 21	AC3	B	346	351	Right-handed alpha
Helix 22	AC4	B	359	363	Right-handed 310
Helix 23	AC5	B	378	389	Right-handed alpha
Helix 24	AC6	B	425	434	Right-handed alpha
Helix 25	AC7	B	473	481	Right-handed alpha
Helix 26	AC8	B	483	490	Right-handed alpha
Helix 27	AC9	B	493	499	Right-handed alpha
Helix 28	AD1	B	510	520	Right-handed alpha
Helix 29	AD2	B	524	536	Right-handed alpha
Helix 30	AD3	B	543	557	Right-handed alpha
Helix 31	AD4	B	562	579	Right-handed alpha
Helix 32	AD5	B	590	595	Right-handed alpha
Helix 33	AD6	C	168	178	Right-handed alpha
Helix 34	AD7	C	183	205	Right-handed alpha
Helix 35	AD8	C	298	309	Right-handed alpha
Helix 36	AD9	C	333	343	Right-handed alpha
Helix 37	AE1	C	346	351	Right-handed alpha
Helix 38	AE2	C	359	364	Right-handed 310
Helix 39	AE3	C	378	385	Right-handed alpha
Helix 40	AE4	C	425	434	Right-handed alpha
Helix 41	AE5	C	472	480	Right-handed alpha
Helix 42	AE6	C	483	491	Right-handed alpha
Helix 43	AE7	C	493	499	Right-handed alpha
Helix 44	AE8	C	510	520	Right-handed alpha
Helix 45	AE9	C	524	536	Right-handed alpha
Helix 46	AF1	C	543	556	Right-handed alpha
Helix 47	AF2	C	557	559	Right-handed 310
Helix 48	AF3	C	560	572	Right-handed alpha
Helix 49	AF4	C	572	579	Right-handed alpha
Helix 50	AF5	C	580	582	Right-handed 310
Helix 51	AF6	C	590	595	Right-handed alpha
Helix 52	AF7	D	168	180	Right-handed alpha
Helix 53	AF8	D	183	204	Right-handed alpha
Helix 54	AF9	D	298	308	Right-handed alpha
Helix 55	AG1	D	333	343	Right-handed alpha
Helix 56	AG2	D	346	351	Right-handed alpha
Helix 57	AG3	D	359	363	Right-handed 310
Helix 58	AG4	D	378	384	Right-handed alpha
Helix 59	AG5	D	384	390	Right-handed alpha
Helix 60	AG6	D	413	415	Right-handed 310
Helix 61	AG7	D	425	437	Right-handed alpha
Helix 62	AG8	D	473	480	Right-handed alpha
Helix 63	AG9	D	483	490	Right-handed alpha
Helix 64	AH1	D	493	499	Right-handed alpha
Helix 65	AH2	D	510	520	Right-handed alpha
Helix 66	AH3	D	524	535	Right-handed alpha
Helix 67	AH4	D	543	558	Right-handed alpha
Helix 68	AH5	D	559	572	Right-handed alpha
Helix 69	AH6	D	572	579	Right-handed alpha
Helix 70	AH7	D	590	595	Right-handed alpha
Helix 71	AH8	E	168	178	Right-handed alpha
Helix 72	AH9	E	183	204	Right-handed alpha
Helix 73	AI1	E	298	311	Right-handed alpha
Helix 74	AI2	E	332	343	Right-handed alpha
Helix 75	AI3	E	346	353	Right-handed alpha
Helix 76	AI4	E	379	384	Right-handed alpha
Helix 77	AI5	E	384	389	Right-handed alpha
Helix 78	AI6	E	425	434	Right-handed alpha
Helix 79	AI7	E	473	480	Right-handed alpha
Helix 80	AI8	E	483	491	Right-handed alpha
Helix 81	AI9	E	493	500	Right-handed alpha
Helix 82	AJ1	E	510	520	Right-handed alpha
Helix 83	AJ2	E	524	536	Right-handed alpha
Helix 84	AJ3	E	543	557	Right-handed alpha
Helix 85	AJ4	E	560	572	Right-handed alpha
Helix 86	AJ5	E	572	579	Right-handed alpha
Helix 87	AJ6	E	590	595	Right-handed alpha
Helix 88	AJ7	F	168	178	Right-handed alpha
Helix 89	AJ8	F	183	203	Right-handed alpha
Helix 90	AJ9	F	298	311	Right-handed alpha
Helix 91	AK1	F	338	343	Right-handed alpha
Helix 92	AK2	F	381	383	Right-handed 310
Helix 93	AK3	F	384	389	Right-handed alpha
Helix 94	AK4	F	425	434	Right-handed alpha
Helix 95	AK5	F	474	480	Right-handed alpha
Helix 96	AK6	F	486	491	Right-handed alpha
Helix 97	AK7	F	493	499	Right-handed alpha
Helix 98	AK8	F	512	518	Right-handed alpha
Helix 99	AK9	F	524	534	Right-handed alpha
Helix 100	AL1	F	543	557	Right-handed alpha
Helix 101	AL2	F	560	562	Right-handed 310
Helix 102	AL3	F	563	579	Right-handed alpha
Helix 103	AL4	F	590	595	Right-handed alpha

There are 15 sheets in PDB entry 9P9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	318	first strand
Strand 2	A	354	358	parallel
Strand 3	A	416	420	parallel
Strand 4	A	289	292	parallel
Strand 5	A	502	505	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	542	first strand
Strand 2	A	584	589	parallel
Strand 3	A	601	604	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	318	first strand
Strand 2	B	354	358	parallel
Strand 3	B	416	420	parallel
Strand 4	B	289	291	parallel
Strand 5	B	502	504	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	410	411	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	542	first strand
Strand 2	B	584	589	parallel
Strand 3	B	601	604	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	318	first strand
Strand 2	C	354	358	parallel
Strand 3	C	416	421	parallel
Strand 4	C	289	292	parallel
Strand 5	C	502	505	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	409	411	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	542	first strand
Strand 2	C	584	589	parallel
Strand 3	C	601	604	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	317	first strand
Strand 2	D	354	357	parallel
Strand 3	D	416	421	parallel
Strand 4	D	289	292	parallel
Strand 5	D	502	505	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	408	411	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	542	first strand
Strand 2	D	586	589	parallel
Strand 3	D	601	603	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	416	421	parallel
Strand 3	E	289	292	parallel
Strand 4	E	502	505	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	540	542	first strand
Strand 2	E	587	589	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	318	first strand
Strand 2	F	354	358	parallel
Strand 3	F	416	420	parallel
Strand 4	F	289	291	parallel
Strand 5	F	502	504	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	542	first strand
Strand 2	F	588	589	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9V