Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9P9W entry

There are 11 chains in PDB entry 9P9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 46	HIS 202
B	LYS 46	HIS 202
C	LYS 46	HIS 202
D	LYS 46	HIS 202
E	LYS 46	HIS 202
F	LYS 46	HIS 202
G	LYS 46	HIS 202
H	LYS 46	HIS 202
I	LYS 46	HIS 202
J	LYS 46	HIS 202
K	LYS 46	HIS 202

There are 44 helices in PDB entry 9P9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	102	108	Right-handed alpha
Helix 3	AA3	A	138	149	Right-handed alpha
Helix 4	AA4	A	149	156	Right-handed alpha
Helix 5	AA5	B	77	81	Right-handed 310
Helix 6	AA6	B	102	108	Right-handed alpha
Helix 7	AA7	B	138	149	Right-handed alpha
Helix 8	AA8	B	149	156	Right-handed alpha
Helix 9	AA9	C	77	81	Right-handed 310
Helix 10	AB1	C	102	108	Right-handed alpha
Helix 11	AB2	C	138	149	Right-handed alpha
Helix 12	AB3	C	149	156	Right-handed alpha
Helix 13	AB4	D	77	81	Right-handed 310
Helix 14	AB5	D	102	108	Right-handed alpha
Helix 15	AB6	D	138	149	Right-handed alpha
Helix 16	AB7	D	149	156	Right-handed alpha
Helix 17	AB8	E	77	81	Right-handed 310
Helix 18	AB9	E	102	108	Right-handed alpha
Helix 19	AC1	E	138	149	Right-handed alpha
Helix 20	AC2	E	149	156	Right-handed alpha
Helix 21	AC3	F	77	81	Right-handed 310
Helix 22	AC4	F	102	108	Right-handed alpha
Helix 23	AC5	F	138	149	Right-handed alpha
Helix 24	AC6	F	149	156	Right-handed alpha
Helix 25	AC7	G	77	81	Right-handed 310
Helix 26	AC8	G	102	108	Right-handed alpha
Helix 27	AC9	G	138	149	Right-handed alpha
Helix 28	AD1	G	149	156	Right-handed alpha
Helix 29	AD2	H	77	81	Right-handed 310
Helix 30	AD3	H	102	108	Right-handed alpha
Helix 31	AD4	H	138	149	Right-handed alpha
Helix 32	AD5	H	149	156	Right-handed alpha
Helix 33	AD6	I	77	81	Right-handed 310
Helix 34	AD7	I	102	108	Right-handed alpha
Helix 35	AD8	I	138	149	Right-handed alpha
Helix 36	AD9	I	149	156	Right-handed alpha
Helix 37	AE1	J	77	81	Right-handed 310
Helix 38	AE2	J	102	108	Right-handed alpha
Helix 39	AE3	J	138	149	Right-handed alpha
Helix 40	AE4	J	149	156	Right-handed alpha
Helix 41	AE5	K	77	81	Right-handed 310
Helix 42	AE6	K	102	108	Right-handed alpha
Helix 43	AE7	K	138	149	Right-handed alpha
Helix 44	AE8	K	149	156	Right-handed alpha

There are 22 sheets in PDB entry 9P9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	90	100	anti-parallel
Strand 4	A	161	173	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	75	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	128	132	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	90	100	anti-parallel
Strand 4	B	161	173	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	128	132	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	196	201	anti-parallel
Strand 3	C	90	100	anti-parallel
Strand 4	C	161	173	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	75	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	111	118	anti-parallel
Strand 4	C	128	132	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	196	201	anti-parallel
Strand 3	D	90	100	anti-parallel
Strand 4	D	161	173	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	75	first strand
Strand 2	D	182	188	anti-parallel
Strand 3	D	111	118	anti-parallel
Strand 4	D	128	132	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	50	first strand
Strand 2	E	196	201	anti-parallel
Strand 3	E	90	100	anti-parallel
Strand 4	E	161	173	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	75	first strand
Strand 2	E	182	188	anti-parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	128	132	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	F	196	201	anti-parallel
Strand 3	F	90	100	anti-parallel
Strand 4	F	161	173	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	75	first strand
Strand 2	F	182	188	anti-parallel
Strand 3	F	111	115	anti-parallel
Strand 4	F	128	132	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	50	first strand
Strand 2	G	196	201	anti-parallel
Strand 3	G	90	100	anti-parallel
Strand 4	G	161	173	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	75	first strand
Strand 2	G	180	188	anti-parallel
Strand 3	G	111	119	anti-parallel
Strand 4	G	128	132	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	50	first strand
Strand 2	H	196	201	anti-parallel
Strand 3	H	90	100	anti-parallel
Strand 4	H	161	173	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	75	first strand
Strand 2	H	182	188	anti-parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	128	132	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	47	50	first strand
Strand 2	I	196	201	anti-parallel
Strand 3	I	90	100	anti-parallel
Strand 4	I	161	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	75	first strand
Strand 2	I	182	188	anti-parallel
Strand 3	I	111	115	anti-parallel
Strand 4	I	128	132	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	47	50	first strand
Strand 2	J	196	201	anti-parallel
Strand 3	J	90	100	anti-parallel
Strand 4	J	161	173	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	75	first strand
Strand 2	J	182	188	anti-parallel
Strand 3	J	111	118	anti-parallel
Strand 4	J	128	132	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	47	50	first strand
Strand 2	K	196	201	anti-parallel
Strand 3	K	90	100	anti-parallel
Strand 4	K	161	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	75	first strand
Strand 2	K	182	188	anti-parallel
Strand 3	K	111	118	anti-parallel
Strand 4	K	128	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9P9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9P9W