Analysis of interatomic Contacts of Structural Units in PDB entry:
9PA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PA8 entry

There are 2 chains in PDB entry 9PA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 22	PRO 698
B	LYS 43	PRO 710

There are 33 helices in PDB entry 9PA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	30	49	Right-handed alpha
Helix 2	AA2	F	63	73	Right-handed alpha
Helix 3	AA3	F	84	89	Right-handed alpha
Helix 4	AA4	F	127	131	Right-handed 310
Helix 5	AA5	F	148	153	Right-handed alpha
Helix 6	AA6	F	165	173	Right-handed alpha
Helix 7	AA7	F	186	191	Right-handed 310
Helix 8	AA8	F	205	216	Right-handed alpha
Helix 9	AA9	F	228	233	Right-handed alpha
Helix 10	AB1	F	235	240	Right-handed alpha
Helix 11	AB2	F	278	294	Right-handed alpha
Helix 12	AB3	F	329	335	Right-handed alpha
Helix 13	AB4	F	336	348	Right-handed alpha
Helix 14	AB5	F	367	381	Right-handed alpha
Helix 15	AB6	F	392	402	Right-handed alpha
Helix 16	AB7	F	411	422	Right-handed alpha
Helix 17	AB8	F	436	440	Right-handed 310
Helix 18	AB9	F	480	491	Right-handed alpha
Helix 19	AC1	F	494	499	Right-handed alpha
Helix 20	AC2	F	511	515	Right-handed 310
Helix 21	AC3	F	520	524	Right-handed 310
Helix 22	AC4	F	534	547	Right-handed alpha
Helix 23	AC5	F	555	560	Right-handed alpha
Helix 24	AC6	F	612	627	Right-handed alpha
Helix 25	AC7	F	643	647	Right-handed 310
Helix 26	AC8	F	665	671	Right-handed alpha
Helix 27	AC9	F	671	680	Right-handed alpha
Helix 28	AD1	F	688	693	Right-handed alpha
Helix 29	AD2	F	694	697	Right-handed 310
Helix 30	AD3	B	84	88	Right-handed 310
Helix 31	AD4	B	101	110	Right-handed alpha
Helix 32	AD5	B	246	250	Right-handed 310
Helix 33	AD6	B	681	684	Right-handed 310

There are 15 sheets in PDB entry 9PA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	55	56	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	81	first strand
Strand 2	F	269	273	anti-parallel
Strand 3	F	96	106	anti-parallel
Strand 4	F	109	111	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	81	first strand
Strand 2	F	269	273	anti-parallel
Strand 3	F	96	106	anti-parallel
Strand 4	F	318	323	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	177	first strand
Strand 2	F	136	137	parallel
Strand 3	F	221	225	parallel
Strand 4	F	113	120	anti-parallel
Strand 5	F	243	245	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	177	first strand
Strand 2	F	136	137	parallel
Strand 3	F	221	225	parallel
Strand 4	F	113	120	anti-parallel
Strand 5	F	263	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	366	first strand
Strand 2	F	385	390	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	410	first strand
Strand 2	F	605	608	anti-parallel
Strand 3	F	424	430	anti-parallel
Strand 4	F	656	658	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	503	first strand
Strand 2	F	467	469	parallel
Strand 3	F	549	553	parallel
Strand 4	F	445	452	anti-parallel
Strand 5	F	578	581	anti-parallel
Strand 6	F	587	589	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	503	first strand
Strand 2	F	467	469	parallel
Strand 3	F	549	553	parallel
Strand 4	F	445	452	anti-parallel
Strand 5	F	599	601	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	179	189	anti-parallel
Strand 4	B	155	165	anti-parallel
Strand 5	B	120	121	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	401	403	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	209	first strand
Strand 2	B	262	269	anti-parallel
Strand 3	B	274	282	anti-parallel
Strand 4	B	293	303	anti-parallel
Strand 5	B	307	313	anti-parallel
Strand 6	B	332	341	anti-parallel
Strand 7	B	347	352	anti-parallel
Strand 8	B	361	366	anti-parallel
Strand 9	B	201	209	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	544	552	anti-parallel
Strand 4	B	513	521	anti-parallel
Strand 5	B	500	506	anti-parallel
Strand 6	B	461	466	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	571	first strand
Strand 2	B	595	601	anti-parallel
Strand 3	B	606	612	anti-parallel
Strand 4	B	624	628	anti-parallel
Strand 5	B	631	635	anti-parallel
Strand 6	B	663	668	anti-parallel
Strand 7	B	674	679	anti-parallel
Strand 8	B	702	708	anti-parallel
Strand 9	B	565	571	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	582	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PA8