Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PAR entry

There are 4 chains in PDB entry 9PAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 31	SER 1092
B	ASP 31	SER 1092
C	ASP 31	SER 1092
D	ASP 31	SER 1092

There are192 helices in PDB entry 9PAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	35	40	Right-handed alpha
Helix 3	AA3	A	116	127	Right-handed alpha
Helix 4	AA4	A	149	167	Right-handed alpha
Helix 5	AA5	A	178	194	Right-handed alpha
Helix 6	AA6	A	209	211	Right-handed 310
Helix 7	AA7	A	213	218	Right-handed 310
Helix 8	AA8	A	265	279	Right-handed alpha
Helix 9	AA9	A	300	313	Right-handed alpha
Helix 10	AB1	A	325	333	Right-handed alpha
Helix 11	AB2	A	341	353	Right-handed alpha
Helix 12	AB3	A	355	360	Right-handed alpha
Helix 13	AB4	A	361	376	Right-handed alpha
Helix 14	AB5	A	377	380	Right-handed 310
Helix 15	AB6	A	393	408	Right-handed alpha
Helix 16	AB7	A	410	414	Right-handed 310
Helix 17	AB8	A	416	428	Right-handed alpha
Helix 18	AB9	A	429	437	Right-handed alpha
Helix 19	AC1	A	449	459	Right-handed alpha
Helix 20	AC2	A	461	470	Right-handed alpha
Helix 21	AC3	A	474	479	Right-handed alpha
Helix 22	AC4	A	480	491	Right-handed alpha
Helix 23	AC5	A	493	508	Right-handed alpha
Helix 24	AC6	A	509	523	Right-handed alpha
Helix 25	AC7	A	550	562	Right-handed alpha
Helix 26	AC8	A	566	573	Right-handed alpha
Helix 27	AC9	A	577	596	Right-handed alpha
Helix 28	AD1	A	600	627	Right-handed alpha
Helix 29	AD2	A	628	637	Right-handed alpha
Helix 30	AD3	A	647	651	Right-handed alpha
Helix 31	AD4	A	666	679	Right-handed alpha
Helix 32	AD5	A	686	694	Right-handed alpha
Helix 33	AD6	A	722	727	Right-handed alpha
Helix 34	AD7	A	728	753	Right-handed alpha
Helix 35	AD8	A	760	785	Right-handed alpha
Helix 36	AD9	A	786	790	Right-handed 310
Helix 37	AE1	A	791	812	Right-handed alpha
Helix 38	AE2	A	815	841	Right-handed alpha
Helix 39	AE3	A	842	844	Right-handed 310
Helix 40	AE4	A	847	858	Right-handed alpha
Helix 41	AE5	A	859	884	Right-handed alpha
Helix 42	AE6	A	890	898	Right-handed alpha
Helix 43	AE7	A	899	903	Right-handed 310
Helix 44	AE8	A	949	976	Right-handed alpha
Helix 45	AE9	A	984	1001	Right-handed alpha
Helix 46	AF1	A	1006	1017	Right-handed alpha
Helix 47	AF2	A	1042	1064	Right-handed alpha
Helix 48	AF3	A	1070	1092	Right-handed alpha
Helix 49	AF4	B	31	34	Right-handed 310
Helix 50	AF5	B	35	40	Right-handed alpha
Helix 51	AF6	B	116	127	Right-handed alpha
Helix 52	AF7	B	149	167	Right-handed alpha
Helix 53	AF8	B	178	194	Right-handed alpha
Helix 54	AF9	B	209	211	Right-handed 310
Helix 55	AG1	B	213	218	Right-handed 310
Helix 56	AG2	B	265	279	Right-handed alpha
Helix 57	AG3	B	300	313	Right-handed alpha
Helix 58	AG4	B	325	333	Right-handed alpha
Helix 59	AG5	B	341	353	Right-handed alpha
Helix 60	AG6	B	355	360	Right-handed alpha
Helix 61	AG7	B	361	376	Right-handed alpha
Helix 62	AG8	B	377	380	Right-handed 310
Helix 63	AG9	B	393	408	Right-handed alpha
Helix 64	AH1	B	410	414	Right-handed 310
Helix 65	AH2	B	416	428	Right-handed alpha
Helix 66	AH3	B	429	437	Right-handed alpha
Helix 67	AH4	B	449	459	Right-handed alpha
Helix 68	AH5	B	461	470	Right-handed alpha
Helix 69	AH6	B	474	479	Right-handed alpha
Helix 70	AH7	B	480	491	Right-handed alpha
Helix 71	AH8	B	493	508	Right-handed alpha
Helix 72	AH9	B	509	523	Right-handed alpha
Helix 73	AI1	B	550	562	Right-handed alpha
Helix 74	AI2	B	566	573	Right-handed alpha
Helix 75	AI3	B	577	596	Right-handed alpha
Helix 76	AI4	B	600	627	Right-handed alpha
Helix 77	AI5	B	628	637	Right-handed alpha
Helix 78	AI6	B	647	651	Right-handed alpha
Helix 79	AI7	B	666	679	Right-handed alpha
Helix 80	AI8	B	686	694	Right-handed alpha
Helix 81	AI9	B	722	727	Right-handed alpha
Helix 82	AJ1	B	728	753	Right-handed alpha
Helix 83	AJ2	B	760	785	Right-handed alpha
Helix 84	AJ3	B	786	790	Right-handed 310
Helix 85	AJ4	B	791	812	Right-handed alpha
Helix 86	AJ5	B	815	841	Right-handed alpha
Helix 87	AJ6	B	842	844	Right-handed 310
Helix 88	AJ7	B	847	858	Right-handed alpha
Helix 89	AJ8	B	859	884	Right-handed alpha
Helix 90	AJ9	B	890	898	Right-handed alpha
Helix 91	AK1	B	899	903	Right-handed 310
Helix 92	AK2	B	949	976	Right-handed alpha
Helix 93	AK3	B	984	1001	Right-handed alpha
Helix 94	AK4	B	1006	1017	Right-handed alpha
Helix 95	AK5	B	1042	1064	Right-handed alpha
Helix 96	AK6	B	1070	1092	Right-handed alpha
Helix 97	AK7	C	31	34	Right-handed 310
Helix 98	AK8	C	35	40	Right-handed alpha
Helix 99	AK9	C	116	127	Right-handed alpha
Helix 100	AL1	C	149	167	Right-handed alpha
Helix 101	AL2	C	178	194	Right-handed alpha
Helix 102	AL3	C	209	211	Right-handed 310
Helix 103	AL4	C	213	218	Right-handed 310
Helix 104	AL5	C	265	279	Right-handed alpha
Helix 105	AL6	C	300	313	Right-handed alpha
Helix 106	AL7	C	325	333	Right-handed alpha
Helix 107	AL8	C	341	353	Right-handed alpha
Helix 108	AL9	C	355	360	Right-handed alpha
Helix 109	AM1	C	361	376	Right-handed alpha
Helix 110	AM2	C	377	380	Right-handed 310
Helix 111	AM3	C	393	408	Right-handed alpha
Helix 112	AM4	C	410	414	Right-handed 310
Helix 113	AM5	C	416	428	Right-handed alpha
Helix 114	AM6	C	429	437	Right-handed alpha
Helix 115	AM7	C	449	459	Right-handed alpha
Helix 116	AM8	C	461	470	Right-handed alpha
Helix 117	AM9	C	474	479	Right-handed alpha
Helix 118	AN1	C	480	491	Right-handed alpha
Helix 119	AN2	C	493	508	Right-handed alpha
Helix 120	AN3	C	509	523	Right-handed alpha
Helix 121	AN4	C	550	562	Right-handed alpha
Helix 122	AN5	C	566	573	Right-handed alpha
Helix 123	AN6	C	577	596	Right-handed alpha
Helix 124	AN7	C	600	627	Right-handed alpha
Helix 125	AN8	C	628	637	Right-handed alpha
Helix 126	AN9	C	647	651	Right-handed alpha
Helix 127	AO1	C	666	679	Right-handed alpha
Helix 128	AO2	C	686	694	Right-handed alpha
Helix 129	AO3	C	722	727	Right-handed alpha
Helix 130	AO4	C	728	753	Right-handed alpha
Helix 131	AO5	C	760	785	Right-handed alpha
Helix 132	AO6	C	786	790	Right-handed 310
Helix 133	AO7	C	791	812	Right-handed alpha
Helix 134	AO8	C	815	841	Right-handed alpha
Helix 135	AO9	C	842	844	Right-handed 310
Helix 136	AP1	C	847	858	Right-handed alpha
Helix 137	AP2	C	859	884	Right-handed alpha
Helix 138	AP3	C	890	898	Right-handed alpha
Helix 139	AP4	C	899	903	Right-handed 310
Helix 140	AP5	C	949	976	Right-handed alpha
Helix 141	AP6	C	984	1001	Right-handed alpha
Helix 142	AP7	C	1006	1017	Right-handed alpha
Helix 143	AP8	C	1042	1064	Right-handed alpha
Helix 144	AP9	C	1070	1092	Right-handed alpha
Helix 145	AQ1	D	31	34	Right-handed 310
Helix 146	AQ2	D	35	40	Right-handed alpha
Helix 147	AQ3	D	116	127	Right-handed alpha
Helix 148	AQ4	D	149	167	Right-handed alpha
Helix 149	AQ5	D	178	194	Right-handed alpha
Helix 150	AQ6	D	209	211	Right-handed 310
Helix 151	AQ7	D	213	218	Right-handed 310
Helix 152	AQ8	D	265	279	Right-handed alpha
Helix 153	AQ9	D	300	313	Right-handed alpha
Helix 154	AR1	D	325	333	Right-handed alpha
Helix 155	AR2	D	341	353	Right-handed alpha
Helix 156	AR3	D	355	360	Right-handed alpha
Helix 157	AR4	D	361	376	Right-handed alpha
Helix 158	AR5	D	377	380	Right-handed 310
Helix 159	AR6	D	393	408	Right-handed alpha
Helix 160	AR7	D	410	414	Right-handed 310
Helix 161	AR8	D	416	428	Right-handed alpha
Helix 162	AR9	D	429	437	Right-handed alpha
Helix 163	AS1	D	449	459	Right-handed alpha
Helix 164	AS2	D	461	470	Right-handed alpha
Helix 165	AS3	D	474	479	Right-handed alpha
Helix 166	AS4	D	480	491	Right-handed alpha
Helix 167	AS5	D	493	508	Right-handed alpha
Helix 168	AS6	D	509	523	Right-handed alpha
Helix 169	AS7	D	550	562	Right-handed alpha
Helix 170	AS8	D	566	573	Right-handed alpha
Helix 171	AS9	D	577	596	Right-handed alpha
Helix 172	AT1	D	600	627	Right-handed alpha
Helix 173	AT2	D	628	637	Right-handed alpha
Helix 174	AT3	D	647	651	Right-handed alpha
Helix 175	AT4	D	666	679	Right-handed alpha
Helix 176	AT5	D	686	694	Right-handed alpha
Helix 177	AT6	D	722	727	Right-handed alpha
Helix 178	AT7	D	728	753	Right-handed alpha
Helix 179	AT8	D	760	785	Right-handed alpha
Helix 180	AT9	D	786	790	Right-handed 310
Helix 181	AU1	D	791	812	Right-handed alpha
Helix 182	AU2	D	815	841	Right-handed alpha
Helix 183	AU3	D	842	844	Right-handed 310
Helix 184	AU4	D	847	858	Right-handed alpha
Helix 185	AU5	D	859	884	Right-handed alpha
Helix 186	AU6	D	890	898	Right-handed alpha
Helix 187	AU7	D	899	903	Right-handed 310
Helix 188	AU8	D	949	976	Right-handed alpha
Helix 189	AU9	D	984	1001	Right-handed alpha
Helix 190	AV1	D	1006	1017	Right-handed alpha
Helix 191	AV2	D	1042	1064	Right-handed alpha
Helix 192	AV3	D	1070	1092	Right-handed alpha

There are 12 sheets in PDB entry 9PAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	87	90	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	A	250	255	parallel
Strand 3	A	201	207	parallel
Strand 4	A	168	172	parallel
Strand 5	A	135	140	parallel
Strand 6	A	292	296	parallel
Strand 7	A	317	320	parallel
Strand 8	A	382	385	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	639	first strand
Strand 2	A	645	646	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	87	90	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	250	255	parallel
Strand 3	B	201	207	parallel
Strand 4	B	168	172	parallel
Strand 5	B	135	140	parallel
Strand 6	B	292	296	parallel
Strand 7	B	317	320	parallel
Strand 8	B	382	385	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	639	first strand
Strand 2	B	645	646	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	87	90	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	112	first strand
Strand 2	C	250	255	parallel
Strand 3	C	201	207	parallel
Strand 4	C	168	172	parallel
Strand 5	C	135	140	parallel
Strand 6	C	292	296	parallel
Strand 7	C	317	320	parallel
Strand 8	C	382	385	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	639	first strand
Strand 2	C	645	646	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	87	90	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	112	first strand
Strand 2	D	250	255	parallel
Strand 3	D	201	207	parallel
Strand 4	D	168	172	parallel
Strand 5	D	135	140	parallel
Strand 6	D	292	296	parallel
Strand 7	D	317	320	parallel
Strand 8	D	382	385	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	639	first strand
Strand 2	D	645	646	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAR