Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PAT entry

There are 8 chains in PDB entry 9PAT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 1478
B	MET 1	VAL 1096
C	ALA 1502	ASP 1537
C	LEU 1539	ALA 1576
G	GLU 3	PRO 220
H	GLU 3	PRO 220
I	ASP 17	PHE 231
L	ASP 17	PHE 231

There are114 helices in PDB entry 9PAT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	33	Right-handed alpha
Helix 2	AA2	A	50	60	Right-handed alpha
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	112	119	Right-handed alpha
Helix 6	AA6	A	120	137	Right-handed alpha
Helix 7	AA7	A	141	145	Right-handed 310
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	172	178	Right-handed alpha
Helix 10	AB1	A	180	191	Right-handed alpha
Helix 11	AB2	A	201	203	Right-handed 310
Helix 12	AB3	A	204	219	Right-handed alpha
Helix 13	AB4	A	236	245	Right-handed alpha
Helix 14	AB5	A	278	285	Right-handed alpha
Helix 15	AB6	A	310	326	Right-handed alpha
Helix 16	AB7	A	328	332	Right-handed 310
Helix 17	AB8	A	344	357	Right-handed alpha
Helix 18	AB9	A	370	375	Right-handed alpha
Helix 19	AC1	A	380	395	Right-handed alpha
Helix 20	AC2	A	477	493	Right-handed alpha
Helix 21	AC3	A	497	508	Right-handed alpha
Helix 22	AC4	A	522	533	Right-handed alpha
Helix 23	AC5	A	560	566	Right-handed alpha
Helix 24	AC6	A	566	581	Right-handed alpha
Helix 25	AC7	A	582	584	Right-handed 310
Helix 26	AC8	A	587	594	Right-handed alpha
Helix 27	AC9	A	600	622	Right-handed alpha
Helix 28	AD1	A	633	644	Right-handed alpha
Helix 29	AD2	A	647	666	Right-handed alpha
Helix 30	AD3	A	678	685	Right-handed alpha
Helix 31	AD4	A	706	721	Right-handed alpha
Helix 32	AD5	A	735	740	Right-handed 310
Helix 33	AD6	A	741	749	Right-handed alpha
Helix 34	AD7	A	777	787	Right-handed alpha
Helix 35	AD8	A	791	801	Right-handed alpha
Helix 36	AD9	A	815	823	Right-handed alpha
Helix 37	AE1	A	836	850	Right-handed alpha
Helix 38	AE2	A	855	859	Right-handed 310
Helix 39	AE3	A	919	921	Right-handed 310
Helix 40	AE4	A	925	941	Right-handed alpha
Helix 41	AE5	A	972	976	Right-handed 310
Helix 42	AE6	A	1024	1028	Right-handed 310
Helix 43	AE7	A	1031	1043	Right-handed alpha
Helix 44	AE8	A	1101	1103	Right-handed 310
Helix 45	AE9	A	1130	1143	Right-handed alpha
Helix 46	AF1	A	1159	1176	Right-handed alpha
Helix 47	AF2	A	1187	1189	Right-handed 310
Helix 48	AF3	A	1190	1197	Right-handed alpha
Helix 49	AF4	A	1239	1252	Right-handed alpha
Helix 50	AF5	A	1267	1277	Right-handed alpha
Helix 51	AF6	A	1290	1301	Right-handed alpha
Helix 52	AF7	A	1326	1335	Right-handed alpha
Helix 53	AF8	A	1337	1349	Right-handed alpha
Helix 54	AF9	A	1362	1367	Right-handed alpha
Helix 55	AG1	A	1371	1391	Right-handed alpha
Helix 56	AG2	A	1414	1424	Right-handed alpha
Helix 57	AG3	A	1430	1445	Right-handed alpha
Helix 58	AG4	A	1454	1465	Right-handed alpha
Helix 59	AG5	A	1469	1474	Right-handed alpha
Helix 60	AG6	B	5	33	Right-handed alpha
Helix 61	AG7	B	50	61	Right-handed alpha
Helix 62	AG8	B	75	80	Right-handed alpha
Helix 63	AG9	B	105	110	Right-handed alpha
Helix 64	AH1	B	112	119	Right-handed alpha
Helix 65	AH2	B	120	137	Right-handed alpha
Helix 66	AH3	B	140	145	Right-handed alpha
Helix 67	AH4	B	166	170	Right-handed 310
Helix 68	AH5	B	173	178	Right-handed alpha
Helix 69	AH6	B	180	191	Right-handed alpha
Helix 70	AH7	B	201	203	Right-handed 310
Helix 71	AH8	B	204	220	Right-handed alpha
Helix 72	AH9	B	236	245	Right-handed alpha
Helix 73	AI1	B	278	285	Right-handed alpha
Helix 74	AI2	B	310	326	Right-handed alpha
Helix 75	AI3	B	344	357	Right-handed alpha
Helix 76	AI4	B	369	373	Right-handed 310
Helix 77	AI5	B	377	394	Right-handed alpha
Helix 78	AI6	B	477	493	Right-handed alpha
Helix 79	AI7	B	497	508	Right-handed alpha
Helix 80	AI8	B	522	533	Right-handed alpha
Helix 81	AI9	B	558	566	Right-handed alpha
Helix 82	AJ1	B	566	581	Right-handed alpha
Helix 83	AJ2	B	587	594	Right-handed alpha
Helix 84	AJ3	B	600	622	Right-handed alpha
Helix 85	AJ4	B	633	644	Right-handed alpha
Helix 86	AJ5	B	647	666	Right-handed alpha
Helix 87	AJ6	B	678	685	Right-handed alpha
Helix 88	AJ7	B	707	721	Right-handed alpha
Helix 89	AJ8	B	735	740	Right-handed 310
Helix 90	AJ9	B	741	749	Right-handed alpha
Helix 91	AK1	B	777	787	Right-handed alpha
Helix 92	AK2	B	790	801	Right-handed alpha
Helix 93	AK3	B	815	824	Right-handed alpha
Helix 94	AK4	B	836	850	Right-handed alpha
Helix 95	AK5	B	919	921	Right-handed 310
Helix 96	AK6	B	925	940	Right-handed alpha
Helix 97	AK7	B	972	976	Right-handed 310
Helix 98	AK8	B	1024	1028	Right-handed 310
Helix 99	AK9	B	1031	1041	Right-handed alpha
Helix 100	AL1	C	1503	1518	Right-handed alpha
Helix 101	AL2	C	1537	1553	Right-handed alpha
Helix 102	AL3	C	1559	1564	Right-handed alpha
Helix 103	AL4	C	1566	1576	Right-handed alpha
Helix 104	AL5	G	66	69	Right-handed 310
Helix 105	AL6	G	91	95	Right-handed 310
Helix 106	AL7	H	30	34	Right-handed 310
Helix 107	AL8	H	55	59	Right-handed 310
Helix 108	AL9	H	91	95	Right-handed 310
Helix 109	AM1	H	163	165	Right-handed 310
Helix 110	AM2	I	100	104	Right-handed 310
Helix 111	AM3	I	143	150	Right-handed alpha
Helix 112	AM4	I	205	211	Right-handed alpha
Helix 113	AM5	L	143	149	Right-handed alpha
Helix 114	AM6	L	205	211	Right-handed alpha

There are 45 sheets in PDB entry 9PAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	150	154	parallel
Strand 3	A	224	231	parallel
Strand 4	A	269	277	anti-parallel
Strand 5	A	35	43	anti-parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	446	453	anti-parallel
Strand 8	A	435	441	anti-parallel
Strand 9	A	334	336	parallel
Strand 10	A	365	368	parallel
Strand 11	A	418	420	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	94	95	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	425	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	475	first strand
Strand 2	A	514	520	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	630	first strand
Strand 2	A	544	547	parallel
Strand 3	A	805	808	parallel
Strand 4	A	826	827	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	727	first strand
Strand 2	A	671	675	anti-parallel
Strand 3	A	700	705	anti-parallel
Strand 4	A	690	697	anti-parallel
Strand 5	A	789	790	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	762	first strand
Strand 2	A	769	770	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	905	911	anti-parallel
Strand 3	A	962	968	anti-parallel
Strand 4	A	977	984	anti-parallel
Strand 5	A	991	999	anti-parallel
Strand 6	A	944	949	anti-parallel
Strand 7	A	1049	1053	anti-parallel
Strand 8	A	1089	1092	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	924	first strand
Strand 2	A	954	955	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1017	first strand
Strand 2	A	1065	1067	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1056	1057	first strand
Strand 2	A	1083	1087	anti-parallel
Strand 3	A	1073	1077	anti-parallel
Strand 4	A	1069	1070	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1213	1216	first strand
Strand 2	A	1105	1109	anti-parallel
Strand 3	A	1446	1450	anti-parallel
Strand 4	A	1396	1400	parallel
Strand 5	A	1355	1361	parallel
Strand 6	A	1307	1312	parallel
Strand 7	A	1231	1235	parallel
Strand 8	A	1257	1262	parallel
Strand 9	A	1280	1281	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1213	1216	first strand
Strand 2	A	1105	1109	anti-parallel
Strand 3	A	1446	1450	anti-parallel
Strand 4	A	1396	1400	parallel
Strand 5	A	1355	1361	parallel
Strand 6	A	1307	1312	parallel
Strand 7	A	1231	1235	parallel
Strand 8	A	1257	1262	parallel
Strand 9	A	1284	1285	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1113	first strand
Strand 2	A	1208	1210	anti-parallel
Strand 3	A	1203	1205	anti-parallel
Strand 4	A	1180	1185	parallel
Strand 5	A	1149	1153	parallel
Strand 6	A	1123	1127	parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	150	154	parallel
Strand 3	B	225	231	parallel
Strand 4	B	269	277	anti-parallel
Strand 5	B	35	43	anti-parallel
Strand 6	B	290	298	anti-parallel
Strand 7	B	447	454	anti-parallel
Strand 8	B	435	441	anti-parallel
Strand 9	B	334	336	parallel
Strand 10	B	365	368	parallel
Strand 11	B	418	420	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	94	95	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	876	877	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	425	426	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	514	520	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	544	548	parallel
Strand 3	B	805	808	parallel
Strand 4	B	827	828	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	691	first strand
Strand 2	B	701	706	anti-parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	724	727	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	763	first strand
Strand 2	B	768	770	anti-parallel

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There are 11 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	905	911	anti-parallel
Strand 3	B	962	968	anti-parallel
Strand 4	B	977	984	anti-parallel
Strand 5	B	991	999	anti-parallel
Strand 6	B	944	950	anti-parallel
Strand 7	B	1047	1057	anti-parallel
Strand 8	B	1083	1087	anti-parallel
Strand 9	B	1074	1077	anti-parallel
Strand 10	B	1064	1069	anti-parallel
Strand 11	B	1015	1018	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	905	911	anti-parallel
Strand 3	B	962	968	anti-parallel
Strand 4	B	977	984	anti-parallel
Strand 5	B	991	999	anti-parallel
Strand 6	B	944	950	anti-parallel
Strand 7	B	1047	1057	anti-parallel
Strand 8	B	1089	1094	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	924	first strand
Strand 2	B	954	955	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	9	first strand
Strand 2	G	20	27	anti-parallel
Strand 3	G	82	87	anti-parallel
Strand 4	G	73	77	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	114	118	parallel
Strand 3	G	96	102	anti-parallel
Strand 4	G	36	41	anti-parallel
Strand 5	G	48	53	anti-parallel
Strand 6	G	62	64	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	114	118	parallel
Strand 3	G	96	102	anti-parallel
Strand 4	G	109	110	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	145	152	anti-parallel
Strand 3	G	183	189	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	145	152	anti-parallel
Strand 3	G	183	189	anti-parallel
Strand 4	G	176	177	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	202	207	anti-parallel
Strand 3	G	212	217	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	19	27	anti-parallel
Strand 3	H	82	88	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	36	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	207	anti-parallel
Strand 3	H	212	218	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	22	first strand
Strand 2	I	35	41	anti-parallel
Strand 3	I	91	96	anti-parallel
Strand 4	I	83	88	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	124	128	parallel
Strand 3	I	105	111	anti-parallel
Strand 4	I	54	59	anti-parallel
Strand 5	I	66	70	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	140	first strand
Strand 2	I	151	161	anti-parallel
Strand 3	I	195	204	anti-parallel
Strand 4	I	181	185	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	170	first strand
Strand 2	I	216	219	anti-parallel
Strand 3	I	227	229	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	22	first strand
Strand 2	L	35	41	anti-parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	83	88	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	75	first strand
Strand 2	L	66	70	anti-parallel
Strand 3	L	54	59	anti-parallel
Strand 4	L	106	111	anti-parallel
Strand 5	L	124	125	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	167	169	first strand
Strand 2	L	216	219	anti-parallel
Strand 3	L	227	229	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9PAT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAT