Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PAV entry

There are 8 chains in PDB entry 9PAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 3	PRO 220
L	ASP 17	PHE 231
G	GLU 3	PRO 220
I	ASP 17	PHE 231
A	MET 1	LEU 1478
B	MET 1	VAL 1096
C	ALA 1502	ASP 1537
C	LEU 1539	ALA 1576

There are115 helices in PDB entry 9PAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	55	59	Right-handed 310
Helix 2	AA2	H	91	95	Right-handed 310
Helix 3	AA3	H	163	165	Right-handed 310
Helix 4	AA4	L	100	104	Right-handed 310
Helix 5	AA5	L	143	150	Right-handed alpha
Helix 6	AA6	L	205	211	Right-handed alpha
Helix 7	AA7	G	30	34	Right-handed 310
Helix 8	AA8	G	55	59	Right-handed 310
Helix 9	AA9	G	163	165	Right-handed 310
Helix 10	AB1	I	100	104	Right-handed 310
Helix 11	AB2	I	143	150	Right-handed alpha
Helix 12	AB3	I	205	211	Right-handed alpha
Helix 13	AB4	A	4	33	Right-handed alpha
Helix 14	AB5	A	50	59	Right-handed alpha
Helix 15	AB6	A	76	80	Right-handed 310
Helix 16	AB7	A	112	119	Right-handed alpha
Helix 17	AB8	A	120	137	Right-handed alpha
Helix 18	AB9	A	141	145	Right-handed 310
Helix 19	AC1	A	166	170	Right-handed 310
Helix 20	AC2	A	172	178	Right-handed alpha
Helix 21	AC3	A	180	191	Right-handed alpha
Helix 22	AC4	A	201	203	Right-handed 310
Helix 23	AC5	A	204	220	Right-handed alpha
Helix 24	AC6	A	236	246	Right-handed alpha
Helix 25	AC7	A	278	285	Right-handed alpha
Helix 26	AC8	A	310	326	Right-handed alpha
Helix 27	AC9	A	344	358	Right-handed alpha
Helix 28	AD1	A	369	373	Right-handed 310
Helix 29	AD2	A	377	379	Right-handed 310
Helix 30	AD3	A	380	396	Right-handed alpha
Helix 31	AD4	A	477	494	Right-handed alpha
Helix 32	AD5	A	498	508	Right-handed alpha
Helix 33	AD6	A	522	532	Right-handed alpha
Helix 34	AD7	A	559	566	Right-handed alpha
Helix 35	AD8	A	566	581	Right-handed alpha
Helix 36	AD9	A	587	593	Right-handed alpha
Helix 37	AE1	A	600	622	Right-handed alpha
Helix 38	AE2	A	633	636	Right-handed 310
Helix 39	AE3	A	637	642	Right-handed alpha
Helix 40	AE4	A	647	665	Right-handed alpha
Helix 41	AE5	A	678	685	Right-handed alpha
Helix 42	AE6	A	706	721	Right-handed alpha
Helix 43	AE7	A	735	740	Right-handed 310
Helix 44	AE8	A	741	749	Right-handed alpha
Helix 45	AE9	A	777	787	Right-handed alpha
Helix 46	AF1	A	790	801	Right-handed alpha
Helix 47	AF2	A	815	824	Right-handed alpha
Helix 48	AF3	A	836	851	Right-handed alpha
Helix 49	AF4	A	855	859	Right-handed 310
Helix 50	AF5	A	919	921	Right-handed 310
Helix 51	AF6	A	925	941	Right-handed alpha
Helix 52	AF7	A	972	976	Right-handed 310
Helix 53	AF8	A	1031	1044	Right-handed alpha
Helix 54	AF9	A	1101	1103	Right-handed 310
Helix 55	AG1	A	1130	1144	Right-handed alpha
Helix 56	AG2	A	1159	1176	Right-handed alpha
Helix 57	AG3	A	1187	1189	Right-handed 310
Helix 58	AG4	A	1190	1198	Right-handed alpha
Helix 59	AG5	A	1239	1252	Right-handed alpha
Helix 60	AG6	A	1267	1277	Right-handed alpha
Helix 61	AG7	A	1290	1300	Right-handed alpha
Helix 62	AG8	A	1321	1325	Right-handed 310
Helix 63	AG9	A	1326	1335	Right-handed alpha
Helix 64	AH1	A	1337	1348	Right-handed alpha
Helix 65	AH2	A	1362	1366	Right-handed alpha
Helix 66	AH3	A	1371	1391	Right-handed alpha
Helix 67	AH4	A	1408	1412	Right-handed 310
Helix 68	AH5	A	1414	1424	Right-handed alpha
Helix 69	AH6	A	1430	1445	Right-handed alpha
Helix 70	AH7	A	1454	1465	Right-handed alpha
Helix 71	AH8	A	1470	1474	Right-handed 310
Helix 72	AH9	B	5	33	Right-handed alpha
Helix 73	AI1	B	50	60	Right-handed alpha
Helix 74	AI2	B	75	80	Right-handed alpha
Helix 75	AI3	B	112	119	Right-handed alpha
Helix 76	AI4	B	120	137	Right-handed alpha
Helix 77	AI5	B	180	191	Right-handed alpha
Helix 78	AI6	B	201	203	Right-handed 310
Helix 79	AI7	B	204	220	Right-handed alpha
Helix 80	AI8	B	236	245	Right-handed alpha
Helix 81	AI9	B	278	285	Right-handed alpha
Helix 82	AJ1	B	310	326	Right-handed alpha
Helix 83	AJ2	B	344	357	Right-handed alpha
Helix 84	AJ3	B	369	373	Right-handed 310
Helix 85	AJ4	B	377	379	Right-handed 310
Helix 86	AJ5	B	380	396	Right-handed alpha
Helix 87	AJ6	B	412	416	Right-handed 310
Helix 88	AJ7	B	477	493	Right-handed alpha
Helix 89	AJ8	B	497	508	Right-handed alpha
Helix 90	AJ9	B	522	533	Right-handed alpha
Helix 91	AK1	B	559	566	Right-handed alpha
Helix 92	AK2	B	566	581	Right-handed alpha
Helix 93	AK3	B	582	584	Right-handed 310
Helix 94	AK4	B	587	594	Right-handed alpha
Helix 95	AK5	B	600	623	Right-handed alpha
Helix 96	AK6	B	633	644	Right-handed alpha
Helix 97	AK7	B	647	666	Right-handed alpha
Helix 98	AK8	B	678	685	Right-handed alpha
Helix 99	AK9	B	706	719	Right-handed alpha
Helix 100	AL1	B	735	740	Right-handed 310
Helix 101	AL2	B	741	749	Right-handed alpha
Helix 102	AL3	B	777	787	Right-handed alpha
Helix 103	AL4	B	790	802	Right-handed alpha
Helix 104	AL5	B	815	824	Right-handed alpha
Helix 105	AL6	B	836	850	Right-handed alpha
Helix 106	AL7	B	855	859	Right-handed 310
Helix 107	AL8	B	919	923	Right-handed 310
Helix 108	AL9	B	925	940	Right-handed alpha
Helix 109	AM1	B	972	976	Right-handed 310
Helix 110	AM2	B	1031	1044	Right-handed alpha
Helix 111	AM3	C	1503	1518	Right-handed alpha
Helix 112	AM4	C	1530	1535	Right-handed alpha
Helix 113	AM5	C	1537	1553	Right-handed alpha
Helix 114	AM6	C	1559	1564	Right-handed alpha
Helix 115	AM7	C	1566	1576	Right-handed alpha

There are 40 sheets in PDB entry 9PAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	19	27	anti-parallel
Strand 3	H	82	88	anti-parallel
Strand 4	H	73	77	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	36	41	anti-parallel
Strand 5	H	47	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	39	first strand
Strand 2	L	91	96	anti-parallel
Strand 3	L	83	88	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	75	first strand
Strand 2	L	65	70	anti-parallel
Strand 3	L	54	59	anti-parallel
Strand 4	L	105	111	anti-parallel
Strand 5	L	124	126	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	167	170	first strand
Strand 2	L	216	219	anti-parallel
Strand 3	L	227	229	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	9	first strand
Strand 2	G	19	27	anti-parallel
Strand 3	G	82	88	anti-parallel
Strand 4	G	73	77	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	14	first strand
Strand 2	G	117	118	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	47	53	anti-parallel
Strand 3	G	36	41	anti-parallel
Strand 4	G	97	102	anti-parallel
Strand 5	G	109	110	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	47	53	anti-parallel
Strand 3	G	36	41	anti-parallel
Strand 4	G	97	102	anti-parallel
Strand 5	G	114	115	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	144	152	anti-parallel
Strand 3	G	183	190	anti-parallel
Strand 4	G	171	177	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	161	first strand
Strand 2	G	202	207	anti-parallel
Strand 3	G	212	217	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	22	first strand
Strand 2	I	35	41	anti-parallel
Strand 3	I	91	96	anti-parallel
Strand 4	I	83	88	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	70	first strand
Strand 2	I	54	59	anti-parallel
Strand 3	I	105	111	anti-parallel
Strand 4	I	124	126	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	139	first strand
Strand 2	I	151	161	anti-parallel
Strand 3	I	195	204	anti-parallel
Strand 4	I	181	185	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	170	first strand
Strand 2	I	216	219	anti-parallel
Strand 3	I	227	229	anti-parallel

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There are 21 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	365	368	parallel
Strand 3	A	334	336	parallel
Strand 4	A	435	441	parallel
Strand 5	A	446	454	anti-parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	269	277	anti-parallel
Strand 9	A	225	231	anti-parallel
Strand 10	A	150	154	parallel
Strand 11	A	196	200	parallel
Strand 12	B	196	199	anti-parallel
Strand 13	B	150	154	parallel
Strand 14	B	225	231	parallel
Strand 15	B	269	277	anti-parallel
Strand 16	B	35	43	anti-parallel
Strand 17	B	290	298	anti-parallel
Strand 18	B	447	454	anti-parallel
Strand 19	B	435	441	anti-parallel
Strand 20	B	334	336	parallel
Strand 21	B	366	368	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	94	95	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	876	877	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	425	426	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	475	first strand
Strand 2	A	514	520	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	544	548	parallel
Strand 3	A	805	808	parallel
Strand 4	A	826	828	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	692	first strand
Strand 2	A	701	705	anti-parallel
Strand 3	A	671	675	anti-parallel
Strand 4	A	724	727	anti-parallel

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There are 11 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	905	911	anti-parallel
Strand 3	A	962	968	anti-parallel
Strand 4	A	977	984	anti-parallel
Strand 5	A	991	999	anti-parallel
Strand 6	A	944	949	anti-parallel
Strand 7	A	1048	1057	anti-parallel
Strand 8	A	1083	1093	anti-parallel
Strand 9	A	1074	1077	anti-parallel
Strand 10	A	1065	1069	anti-parallel
Strand 11	A	1015	1017	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	924	first strand
Strand 2	A	954	955	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1213	1216	first strand
Strand 2	A	1105	1109	anti-parallel
Strand 3	A	1446	1450	anti-parallel
Strand 4	A	1396	1400	parallel
Strand 5	A	1356	1361	parallel
Strand 6	A	1307	1312	parallel
Strand 7	A	1231	1235	parallel
Strand 8	A	1257	1262	parallel
Strand 9	A	1280	1285	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1113	first strand
Strand 2	A	1208	1210	anti-parallel
Strand 3	A	1201	1205	anti-parallel
Strand 4	A	1180	1185	parallel
Strand 5	A	1150	1154	parallel
Strand 6	A	1124	1127	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	94	95	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	876	877	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	425	426	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	514	520	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	544	548	parallel
Strand 3	B	805	808	parallel
Strand 4	B	826	828	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	692	first strand
Strand 2	B	703	705	anti-parallel
Strand 3	B	671	675	anti-parallel
Strand 4	B	724	726	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	763	first strand
Strand 2	B	768	770	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	905	911	anti-parallel
Strand 3	B	962	968	anti-parallel
Strand 4	B	977	984	anti-parallel
Strand 5	B	994	998	anti-parallel
Strand 6	B	945	950	anti-parallel
Strand 7	B	1048	1053	anti-parallel
Strand 8	B	1089	1093	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1015	1017	first strand
Strand 2	B	1065	1069	anti-parallel
Strand 3	B	1074	1077	anti-parallel
Strand 4	B	1083	1086	anti-parallel
Strand 5	B	1056	1057	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PAV