Analysis of interatomic Contacts of Structural Units in PDB entry:
9PB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PB5 entry

There are 4 chains in PDB entry 9PB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 41	LYS 1104
B	LEU 41	LYS 1104
C	LEU 41	LYS 1104
D	LEU 41	LYS 1104

There are188 helices in PDB entry 9PB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	90	94	Right-handed alpha
Helix 4	AA4	A	125	136	Right-handed alpha
Helix 5	AA5	A	158	168	Right-handed alpha
Helix 6	AA6	A	169	174	Right-handed alpha
Helix 7	AA7	A	186	203	Right-handed alpha
Helix 8	AA8	A	223	228	Right-handed alpha
Helix 9	AA9	A	273	288	Right-handed alpha
Helix 10	AB1	A	309	322	Right-handed alpha
Helix 11	AB2	A	335	345	Right-handed alpha
Helix 12	AB3	A	350	362	Right-handed alpha
Helix 13	AB4	A	362	369	Right-handed alpha
Helix 14	AB5	A	370	386	Right-handed alpha
Helix 15	AB6	A	402	419	Right-handed alpha
Helix 16	AB7	A	425	437	Right-handed alpha
Helix 17	AB8	A	438	446	Right-handed alpha
Helix 18	AB9	A	458	468	Right-handed alpha
Helix 19	AC1	A	470	480	Right-handed alpha
Helix 20	AC2	A	483	488	Right-handed alpha
Helix 21	AC3	A	489	500	Right-handed alpha
Helix 22	AC4	A	502	516	Right-handed alpha
Helix 23	AC5	A	519	532	Right-handed alpha
Helix 24	AC6	A	559	571	Right-handed alpha
Helix 25	AC7	A	577	582	Right-handed alpha
Helix 26	AC8	A	586	603	Right-handed alpha
Helix 27	AC9	A	607	636	Right-handed alpha
Helix 28	AD1	A	637	645	Right-handed alpha
Helix 29	AD2	A	655	663	Right-handed alpha
Helix 30	AD3	A	665	670	Right-handed alpha
Helix 31	AD4	A	671	684	Right-handed alpha
Helix 32	AD5	A	691	701	Right-handed alpha
Helix 33	AD6	A	702	706	Right-handed 310
Helix 34	AD7	A	733	758	Right-handed alpha
Helix 35	AD8	A	765	788	Right-handed alpha
Helix 36	AD9	A	799	819	Right-handed alpha
Helix 37	AE1	A	824	847	Right-handed alpha
Helix 38	AE2	A	853	863	Right-handed alpha
Helix 39	AE3	A	867	889	Right-handed alpha
Helix 40	AE4	A	897	906	Right-handed alpha
Helix 41	AE5	A	953	973	Right-handed alpha
Helix 42	AE6	A	973	984	Right-handed alpha
Helix 43	AE7	A	988	1008	Right-handed alpha
Helix 44	AE8	A	1012	1015	Right-handed 310
Helix 45	AE9	A	1016	1030	Right-handed alpha
Helix 46	AF1	A	1050	1072	Right-handed alpha
Helix 47	AF2	A	1078	1104	Right-handed alpha
Helix 48	AF3	B	42	49	Right-handed alpha
Helix 49	AF4	B	73	78	Right-handed alpha
Helix 50	AF5	B	90	94	Right-handed alpha
Helix 51	AF6	B	125	136	Right-handed alpha
Helix 52	AF7	B	158	168	Right-handed alpha
Helix 53	AF8	B	169	174	Right-handed alpha
Helix 54	AF9	B	186	203	Right-handed alpha
Helix 55	AG1	B	223	228	Right-handed alpha
Helix 56	AG2	B	273	288	Right-handed alpha
Helix 57	AG3	B	309	322	Right-handed alpha
Helix 58	AG4	B	335	345	Right-handed alpha
Helix 59	AG5	B	350	362	Right-handed alpha
Helix 60	AG6	B	362	369	Right-handed alpha
Helix 61	AG7	B	370	386	Right-handed alpha
Helix 62	AG8	B	402	419	Right-handed alpha
Helix 63	AG9	B	425	437	Right-handed alpha
Helix 64	AH1	B	438	446	Right-handed alpha
Helix 65	AH2	B	458	468	Right-handed alpha
Helix 66	AH3	B	470	480	Right-handed alpha
Helix 67	AH4	B	483	488	Right-handed alpha
Helix 68	AH5	B	489	500	Right-handed alpha
Helix 69	AH6	B	502	516	Right-handed alpha
Helix 70	AH7	B	519	532	Right-handed alpha
Helix 71	AH8	B	559	571	Right-handed alpha
Helix 72	AH9	B	577	582	Right-handed alpha
Helix 73	AI1	B	586	603	Right-handed alpha
Helix 74	AI2	B	607	636	Right-handed alpha
Helix 75	AI3	B	637	645	Right-handed alpha
Helix 76	AI4	B	655	663	Right-handed alpha
Helix 77	AI5	B	665	670	Right-handed alpha
Helix 78	AI6	B	671	684	Right-handed alpha
Helix 79	AI7	B	691	701	Right-handed alpha
Helix 80	AI8	B	702	706	Right-handed 310
Helix 81	AI9	B	733	758	Right-handed alpha
Helix 82	AJ1	B	765	788	Right-handed alpha
Helix 83	AJ2	B	799	819	Right-handed alpha
Helix 84	AJ3	B	824	847	Right-handed alpha
Helix 85	AJ4	B	853	863	Right-handed alpha
Helix 86	AJ5	B	867	889	Right-handed alpha
Helix 87	AJ6	B	897	906	Right-handed alpha
Helix 88	AJ7	B	953	973	Right-handed alpha
Helix 89	AJ8	B	973	984	Right-handed alpha
Helix 90	AJ9	B	988	1008	Right-handed alpha
Helix 91	AK1	B	1012	1015	Right-handed 310
Helix 92	AK2	B	1016	1030	Right-handed alpha
Helix 93	AK3	B	1050	1072	Right-handed alpha
Helix 94	AK4	B	1078	1104	Right-handed alpha
Helix 95	AK5	C	42	49	Right-handed alpha
Helix 96	AK6	C	73	78	Right-handed alpha
Helix 97	AK7	C	90	94	Right-handed alpha
Helix 98	AK8	C	125	136	Right-handed alpha
Helix 99	AK9	C	158	168	Right-handed alpha
Helix 100	AL1	C	169	174	Right-handed alpha
Helix 101	AL2	C	186	203	Right-handed alpha
Helix 102	AL3	C	223	228	Right-handed alpha
Helix 103	AL4	C	273	288	Right-handed alpha
Helix 104	AL5	C	309	322	Right-handed alpha
Helix 105	AL6	C	335	345	Right-handed alpha
Helix 106	AL7	C	350	362	Right-handed alpha
Helix 107	AL8	C	362	369	Right-handed alpha
Helix 108	AL9	C	370	386	Right-handed alpha
Helix 109	AM1	C	402	419	Right-handed alpha
Helix 110	AM2	C	425	437	Right-handed alpha
Helix 111	AM3	C	438	446	Right-handed alpha
Helix 112	AM4	C	458	468	Right-handed alpha
Helix 113	AM5	C	470	480	Right-handed alpha
Helix 114	AM6	C	483	488	Right-handed alpha
Helix 115	AM7	C	489	500	Right-handed alpha
Helix 116	AM8	C	502	516	Right-handed alpha
Helix 117	AM9	C	519	532	Right-handed alpha
Helix 118	AN1	C	559	571	Right-handed alpha
Helix 119	AN2	C	577	582	Right-handed alpha
Helix 120	AN3	C	586	603	Right-handed alpha
Helix 121	AN4	C	607	636	Right-handed alpha
Helix 122	AN5	C	637	645	Right-handed alpha
Helix 123	AN6	C	655	663	Right-handed alpha
Helix 124	AN7	C	665	670	Right-handed alpha
Helix 125	AN8	C	671	684	Right-handed alpha
Helix 126	AN9	C	691	701	Right-handed alpha
Helix 127	AO1	C	702	706	Right-handed 310
Helix 128	AO2	C	733	758	Right-handed alpha
Helix 129	AO3	C	765	788	Right-handed alpha
Helix 130	AO4	C	799	819	Right-handed alpha
Helix 131	AO5	C	824	847	Right-handed alpha
Helix 132	AO6	C	853	863	Right-handed alpha
Helix 133	AO7	C	867	889	Right-handed alpha
Helix 134	AO8	C	897	906	Right-handed alpha
Helix 135	AO9	C	953	973	Right-handed alpha
Helix 136	AP1	C	973	984	Right-handed alpha
Helix 137	AP2	C	988	1008	Right-handed alpha
Helix 138	AP3	C	1012	1015	Right-handed 310
Helix 139	AP4	C	1016	1030	Right-handed alpha
Helix 140	AP5	C	1050	1072	Right-handed alpha
Helix 141	AP6	C	1078	1104	Right-handed alpha
Helix 142	AP7	D	42	49	Right-handed alpha
Helix 143	AP8	D	73	78	Right-handed alpha
Helix 144	AP9	D	90	94	Right-handed alpha
Helix 145	AQ1	D	125	136	Right-handed alpha
Helix 146	AQ2	D	158	168	Right-handed alpha
Helix 147	AQ3	D	169	174	Right-handed alpha
Helix 148	AQ4	D	186	203	Right-handed alpha
Helix 149	AQ5	D	223	228	Right-handed alpha
Helix 150	AQ6	D	273	288	Right-handed alpha
Helix 151	AQ7	D	309	322	Right-handed alpha
Helix 152	AQ8	D	335	345	Right-handed alpha
Helix 153	AQ9	D	350	362	Right-handed alpha
Helix 154	AR1	D	362	369	Right-handed alpha
Helix 155	AR2	D	370	386	Right-handed alpha
Helix 156	AR3	D	402	419	Right-handed alpha
Helix 157	AR4	D	425	437	Right-handed alpha
Helix 158	AR5	D	438	446	Right-handed alpha
Helix 159	AR6	D	458	468	Right-handed alpha
Helix 160	AR7	D	470	480	Right-handed alpha
Helix 161	AR8	D	483	488	Right-handed alpha
Helix 162	AR9	D	489	500	Right-handed alpha
Helix 163	AS1	D	502	516	Right-handed alpha
Helix 164	AS2	D	519	532	Right-handed alpha
Helix 165	AS3	D	559	571	Right-handed alpha
Helix 166	AS4	D	577	582	Right-handed alpha
Helix 167	AS5	D	586	603	Right-handed alpha
Helix 168	AS6	D	607	636	Right-handed alpha
Helix 169	AS7	D	637	645	Right-handed alpha
Helix 170	AS8	D	655	663	Right-handed alpha
Helix 171	AS9	D	665	670	Right-handed alpha
Helix 172	AT1	D	671	684	Right-handed alpha
Helix 173	AT2	D	691	701	Right-handed alpha
Helix 174	AT3	D	702	706	Right-handed 310
Helix 175	AT4	D	733	758	Right-handed alpha
Helix 176	AT5	D	765	788	Right-handed alpha
Helix 177	AT6	D	799	819	Right-handed alpha
Helix 178	AT7	D	824	847	Right-handed alpha
Helix 179	AT8	D	853	863	Right-handed alpha
Helix 180	AT9	D	867	889	Right-handed alpha
Helix 181	AU1	D	897	906	Right-handed alpha
Helix 182	AU2	D	953	973	Right-handed alpha
Helix 183	AU3	D	973	984	Right-handed alpha
Helix 184	AU4	D	988	1008	Right-handed alpha
Helix 185	AU5	D	1012	1015	Right-handed 310
Helix 186	AU6	D	1016	1030	Right-handed alpha
Helix 187	AU7	D	1050	1072	Right-handed alpha
Helix 188	AU8	D	1078	1104	Right-handed alpha

There are 20 sheets in PDB entry 9PB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	95	98	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	82	83	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	115	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	259	264	parallel
Strand 3	A	210	216	parallel
Strand 4	A	178	182	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	304	305	parallel
Strand 3	A	326	329	parallel
Strand 4	A	391	394	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	95	98	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	82	83	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	115	117	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	259	264	parallel
Strand 3	B	210	216	parallel
Strand 4	B	178	182	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	304	305	parallel
Strand 3	B	326	329	parallel
Strand 4	B	391	394	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	95	98	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	82	83	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	115	117	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	259	264	parallel
Strand 3	C	210	216	parallel
Strand 4	C	178	182	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	304	305	parallel
Strand 3	C	326	329	parallel
Strand 4	C	391	394	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	95	98	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	82	83	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	115	117	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	259	264	parallel
Strand 3	D	210	216	parallel
Strand 4	D	178	182	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	304	305	parallel
Strand 3	D	326	329	parallel
Strand 4	D	391	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PB5