Analysis of interatomic Contacts of Structural Units in PDB entry:
9PB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PB7 entry

There are 12 chains in PDB entry 9PB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
5	ALA 2	MET 66
0	MET 1	LYS 752
3	ASN 9	LEU 139
7	PRO 101	ASN 767
8	CYS 774	LYS 790
9	VAL 177	GLU 244
N	G -67	T -42
T	A 42	C 67
4	GLU 21	ARG 328
6	GLY 72	VAL 459
1	ASP 167	ASN 639
2	SER 5	ARG 507

There are159 helices in PDB entry 9PB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	5	13	27	Right-handed alpha
Helix 2	AA2	5	46	59	Right-handed alpha
Helix 3	AA3	0	18	24	Right-handed alpha
Helix 4	AA4	0	24	32	Right-handed alpha
Helix 5	AA5	0	48	63	Right-handed alpha
Helix 6	AA6	0	75	96	Right-handed alpha
Helix 7	AA7	0	111	115	Right-handed 310
Helix 8	AA8	0	117	122	Right-handed alpha
Helix 9	AA9	0	125	136	Right-handed alpha
Helix 10	AB1	0	139	148	Right-handed alpha
Helix 11	AB2	0	156	161	Right-handed alpha
Helix 12	AB3	0	166	170	Right-handed 310
Helix 13	AB4	0	177	187	Right-handed alpha
Helix 14	AB5	0	191	197	Right-handed alpha
Helix 15	AB6	0	210	215	Right-handed alpha
Helix 16	AB7	0	218	226	Right-handed alpha
Helix 17	AB8	0	239	243	Right-handed 310
Helix 18	AB9	0	244	249	Right-handed 310
Helix 19	AC1	0	255	278	Right-handed alpha
Helix 20	AC2	0	279	292	Right-handed alpha
Helix 21	AC3	0	294	299	Right-handed alpha
Helix 22	AC4	0	327	345	Right-handed alpha
Helix 23	AC5	0	346	348	Right-handed 310
Helix 24	AC6	0	355	367	Right-handed alpha
Helix 25	AC7	0	370	375	Right-handed alpha
Helix 26	AC8	0	376	387	Right-handed alpha
Helix 27	AC9	0	397	412	Right-handed alpha
Helix 28	AD1	0	442	453	Right-handed alpha
Helix 29	AD2	0	467	473	Right-handed alpha
Helix 30	AD3	0	509	513	Right-handed 310
Helix 31	AD4	0	515	533	Right-handed alpha
Helix 32	AD5	0	543	557	Right-handed alpha
Helix 33	AD6	0	559	565	Right-handed alpha
Helix 34	AD7	0	575	592	Right-handed alpha
Helix 35	AD8	0	613	617	Right-handed 310
Helix 36	AD9	0	632	647	Right-handed alpha
Helix 37	AE1	0	649	656	Right-handed alpha
Helix 38	AE2	0	661	666	Right-handed alpha
Helix 39	AE3	0	684	693	Right-handed 310
Helix 40	AE4	0	694	699	Right-handed alpha
Helix 41	AE5	0	703	708	Right-handed 310
Helix 42	AE6	0	709	725	Right-handed alpha
Helix 43	AE7	0	729	733	Right-handed 310
Helix 44	AE8	0	740	752	Right-handed alpha
Helix 45	AE9	3	21	23	Right-handed 310
Helix 46	AF1	3	40	46	Right-handed alpha
Helix 47	AF2	3	64	68	Right-handed 310
Helix 48	AF3	3	75	90	Right-handed alpha
Helix 49	AF4	3	95	100	Right-handed 310
Helix 50	AF5	3	102	123	Right-handed alpha
Helix 51	AF6	3	125	135	Right-handed alpha
Helix 52	AF7	7	126	130	Right-handed 310
Helix 53	AF8	7	149	158	Right-handed alpha
Helix 54	AF9	7	176	183	Right-handed alpha
Helix 55	AG1	7	190	198	Right-handed alpha
Helix 56	AG2	7	206	214	Right-handed alpha
Helix 57	AG3	7	244	248	Right-handed 310
Helix 58	AG4	7	322	332	Right-handed alpha
Helix 59	AG5	7	363	374	Right-handed alpha
Helix 60	AG6	7	393	404	Right-handed alpha
Helix 61	AG7	7	413	428	Right-handed alpha
Helix 62	AG8	7	431	433	Right-handed 310
Helix 63	AG9	7	458	461	Right-handed 310
Helix 64	AH1	7	467	469	Right-handed 310
Helix 65	AH2	7	470	479	Right-handed alpha
Helix 66	AH3	7	489	493	Right-handed 310
Helix 67	AH4	7	495	500	Right-handed alpha
Helix 68	AH5	7	521	530	Right-handed 310
Helix 69	AH6	7	539	546	Right-handed alpha
Helix 70	AH7	7	562	570	Right-handed alpha
Helix 71	AH8	7	573	582	Right-handed alpha
Helix 72	AH9	7	585	600	Right-handed alpha
Helix 73	AI1	7	611	623	Right-handed alpha
Helix 74	AI2	7	632	645	Right-handed alpha
Helix 75	AI3	7	656	660	Right-handed 310
Helix 76	AI4	7	679	688	Right-handed alpha
Helix 77	AI5	7	714	730	Right-handed alpha
Helix 78	AI6	7	741	745	Right-handed 310
Helix 79	AI7	7	754	767	Right-handed alpha
Helix 80	AI8	9	178	188	Right-handed alpha
Helix 81	AI9	9	190	204	Right-handed alpha
Helix 82	AJ1	9	215	218	Right-handed 310
Helix 83	AJ2	9	225	227	Right-handed 310
Helix 84	AJ3	9	228	244	Right-handed alpha
Helix 85	AJ4	4	33	42	Right-handed alpha
Helix 86	AJ5	4	50	66	Right-handed alpha
Helix 87	AJ6	4	115	130	Right-handed alpha
Helix 88	AJ7	4	130	138	Right-handed alpha
Helix 89	AJ8	4	148	167	Right-handed alpha
Helix 90	AJ9	4	189	191	Right-handed 310
Helix 91	AK1	4	192	207	Right-handed alpha
Helix 92	AK2	4	221	230	Right-handed alpha
Helix 93	AK3	4	243	251	Right-handed alpha
Helix 94	AK4	4	313	321	Right-handed alpha
Helix 95	AK5	6	74	79	Right-handed alpha
Helix 96	AK6	6	82	87	Right-handed 310
Helix 97	AK7	6	97	110	Right-handed alpha
Helix 98	AK8	6	111	113	Right-handed 310
Helix 99	AK9	6	133	137	Right-handed 310
Helix 100	AL1	6	144	164	Right-handed alpha
Helix 101	AL2	6	190	199	Right-handed alpha
Helix 102	AL3	6	200	202	Right-handed 310
Helix 103	AL4	6	209	221	Right-handed alpha
Helix 104	AL5	6	246	257	Right-handed alpha
Helix 105	AL6	6	270	281	Right-handed alpha
Helix 106	AL7	6	293	304	Right-handed alpha
Helix 107	AL8	6	372	378	Right-handed alpha
Helix 108	AL9	6	379	384	Right-handed alpha
Helix 109	AM1	6	437	447	Right-handed alpha
Helix 110	AM2	6	451	457	Right-handed alpha
Helix 111	AM3	1	170	177	Right-handed alpha
Helix 112	AM4	1	177	186	Right-handed alpha
Helix 113	AM5	1	188	201	Right-handed alpha
Helix 114	AM6	1	205	211	Right-handed alpha
Helix 115	AM7	1	213	225	Right-handed alpha
Helix 116	AM8	1	252	263	Right-handed alpha
Helix 117	AM9	1	263	274	Right-handed alpha
Helix 118	AN1	1	279	288	Right-handed alpha
Helix 119	AN2	1	291	298	Right-handed alpha
Helix 120	AN3	1	308	313	Right-handed alpha
Helix 121	AN4	1	314	329	Right-handed alpha
Helix 122	AN5	1	334	338	Right-handed 310
Helix 123	AN6	1	341	345	Right-handed 310
Helix 124	AN7	1	355	359	Right-handed 310
Helix 125	AN8	1	370	390	Right-handed alpha
Helix 126	AN9	1	414	420	Right-handed alpha
Helix 127	AO1	1	469	481	Right-handed alpha
Helix 128	AO2	1	486	490	Right-handed 310
Helix 129	AO3	1	492	514	Right-handed alpha
Helix 130	AO4	1	543	569	Right-handed alpha
Helix 131	AO5	1	572	574	Right-handed 310
Helix 132	AO6	1	575	603	Right-handed alpha
Helix 133	AO7	1	608	614	Right-handed alpha
Helix 134	AO8	1	616	639	Right-handed alpha
Helix 135	AO9	2	6	15	Right-handed alpha
Helix 136	AP1	2	18	27	Right-handed alpha
Helix 137	AP2	2	28	37	Right-handed alpha
Helix 138	AP3	2	40	50	Right-handed alpha
Helix 139	AP4	2	59	64	Right-handed alpha
Helix 140	AP5	2	65	66	Right-handed 310
Helix 141	AP6	2	67	70	Right-handed 310
Helix 142	AP7	2	71	85	Right-handed alpha
Helix 143	AP8	2	91	95	Right-handed 310
Helix 144	AP9	2	101	113	Right-handed alpha
Helix 145	AQ1	2	130	152	Right-handed alpha
Helix 146	AQ2	2	160	169	Right-handed alpha
Helix 147	AQ3	2	185	194	Right-handed alpha
Helix 148	AQ4	2	195	209	Right-handed alpha
Helix 149	AQ5	2	217	229	Right-handed alpha
Helix 150	AQ6	2	243	255	Right-handed alpha
Helix 151	AQ7	2	273	278	Right-handed alpha
Helix 152	AQ8	2	353	356	Right-handed 310
Helix 153	AQ9	2	357	362	Right-handed alpha
Helix 154	AR1	2	383	389	Right-handed alpha
Helix 155	AR2	2	392	403	Right-handed alpha
Helix 156	AR3	2	405	423	Right-handed alpha
Helix 157	AR4	2	434	448	Right-handed alpha
Helix 158	AR5	2	464	478	Right-handed alpha
Helix 159	AR6	2	497	507	Right-handed alpha

There are 24 sheets in PDB entry 9PB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	6	11	first strand
Strand 2	2	452	459	anti-parallel
Strand 3	2	490	493	anti-parallel
Strand 4	2	481	485	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	31	33	first strand
Strand 2	5	41	42	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	174	175	first strand
Strand 2	104	107	parallel
Strand 3	205	209	parallel
Strand 4	69	73	parallel
Strand 5	231	234	parallel
Strand 6	455	458	parallel
Strand 7	36	41	parallel
Strand 8	479	482	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	250	252	first strand
Strand 2	434	439	anti-parallel
Strand 3	416	421	anti-parallel
Strand 4	352	354	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	493	497	first strand
Strand 2	678	682	parallel
Strand 3	619	623	parallel
Strand 4	537	541	parallel
Strand 5	596	601	parallel
Strand 6	568	571	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	12	13	first strand
Strand 2	3	18	19	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	28	29	first strand
Strand 2	3	38	39	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	52	53	first strand
Strand 2	3	62	63	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	117	118	first strand
Strand 2	2	365	370	parallel
Strand 3	2	373	377	anti-parallel
Strand 4	2	346	350	anti-parallel
Strand 5	2	338	340	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	132	134	first strand
Strand 2	7	140	143	anti-parallel
Strand 3	7	171	175	anti-parallel
Strand 4	7	161	165	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	232	233	first strand
Strand 2	7	317	318	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	485	486	first strand
Strand 2	7	510	514	parallel
Strand 3	7	382	385	parallel
Strand 4	7	536	537	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	409	411	first strand
Strand 2	7	452	456	parallel
Strand 3	7	435	437	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	626	627	first strand
Strand 2	7	651	654	parallel
Strand 3	7	605	608	parallel
Strand 4	7	669	672	parallel
Strand 5	7	703	710	parallel
Strand 6	7	552	559	parallel
Strand 7	7	735	736	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	775	776	first strand
Strand 2	8	786	789	anti-parallel
Strand 3	9	219	223	anti-parallel
Strand 4	9	212	214	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	83	87	first strand
Strand 2	4	72	78	anti-parallel
Strand 3	4	24	31	parallel
Strand 4	4	173	178	parallel
Strand 5	4	210	215	parallel
Strand 6	4	235	238	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	285	289	first strand
Strand 2	6	319	323	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	304	305	first strand
Strand 2	4	310	311	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	178	186	first strand
Strand 2	6	169	175	anti-parallel
Strand 3	6	128	131	parallel
Strand 4	6	231	236	parallel
Strand 5	6	260	265	parallel
Strand 6	6	289	290	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	326	335	first strand
Strand 2	6	342	348	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	361	362	first strand
Strand 2	6	369	370	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	390	393	first strand
Strand 2	6	423	428	anti-parallel
Strand 3	6	435	436	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	57	58	first strand
Strand 2	2	97	98	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	237	238	first strand
Strand 2	2	268	269	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PB7