Analysis of interatomic Contacts of Structural Units in PDB entry:
9PB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PB8 entry

There are 9 chains in PDB entry 9PB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 C -110 A -63
O
 THR 60MET 240
T
 T 63 G 110
X
 SER 106GLN 296
W
 ASP 2PRO 235
M
 LYS 161VAL 342
R
 LYS 286LEU 358
U
 ASN 3VAL 286
V
 GLY 5GLU 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9PB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
81 89Right-handed alpha
Helix 2
AA2
O
128 147Right-handed alpha
Helix 3
AA3
O
171 179Right-handed alpha
Helix 4
AA4
O
219 235Right-handed alpha
Helix 5
AA5
X
107 115Right-handed alpha
Helix 6
AA6
X
123 138Right-handed alpha
Helix 7
AA7
X
143 151Right-handed alpha
Helix 8
AA8
X
158 164Right-handed alpha
Helix 9
AA9
X
191 198Right-handed alpha
Helix 10
AB1
X
217 222Right-handed alpha
Helix 11
AB2
X
256 261Right-handed alpha
Helix 12
AB3
X
262 264Right-handed 310
Helix 13
AB4
X
273 282Right-handed alpha
Helix 14
AB5
X
289 293Right-handed 310
Helix 15
AB6
W
3 21Right-handed alpha
Helix 16
AB7
W
22 29Right-handed alpha
Helix 17
AB8
W
29 35Right-handed alpha
Helix 18
AB9
W
39 47Right-handed alpha
Helix 19
AC1
W
50 55Right-handed alpha
Helix 20
AC2
W
57 64Right-handed alpha
Helix 21
AC3
W
91 114Right-handed alpha
Helix 22
AC4
W
132 138Right-handed alpha
Helix 23
AC5
W
160 163Right-handed 310
Helix 24
AC6
W
164 179Right-handed alpha
Helix 25
AC7
W
179 190Right-handed alpha
Helix 26
AC8
W
198 203Right-handed alpha
Helix 27
AC9
M
161 166Right-handed 310
Helix 28
AD1
M
167 182Right-handed alpha
Helix 29
AD2
M
188 196Right-handed alpha
Helix 30
AD3
M
199 219Right-handed alpha
Helix 31
AD4
M
227 231Right-handed 310
Helix 32
AD5
M
234 237Right-handed 310
Helix 33
AD6
M
238 247Right-handed alpha
Helix 34
AD7
M
249 264Right-handed alpha
Helix 35
AD8
M
273 289Right-handed alpha
Helix 36
AD9
M
294 302Right-handed alpha
Helix 37
AE1
M
305 317Right-handed alpha
Helix 38
AE2
M
319 324Right-handed alpha
Helix 39
AE3
M
325 331Right-handed alpha
Helix 40
AE4
M
335 339Right-handed 310
Helix 41
AE5
R
295 310Right-handed alpha
Helix 42
AE6
R
314 323Right-handed alpha
Helix 43
AE7
R
325 335Right-handed alpha
Helix 44
AE8
U
4 29Right-handed alpha
Helix 45
AE9
U
31 50Right-handed alpha
Helix 46
AF1
V
8 12Right-handed 310
Helix 47
AF2
V
13 31Right-handed alpha
Helix 48
AF3
V
32 53Right-handed alpha
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There are 6 sheets in PDB entry 9PB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
93 95first strand
Strand 2
O
99 106anti-parallel
Strand 3
O
111 115anti-parallel
Strand 4
O
120 124anti-parallel
Strand 5
O
66 75anti-parallel
Strand 6
O
156 165anti-parallel
Strand 7
O
211 217anti-parallel
Strand 8
O
203 206anti-parallel
Strand 9
O
193 196anti-parallel
Strand 10
O
183 185anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
205 206first strand
Strand 2
X
241 246anti-parallel
Strand 3
X
230 234anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
67 72first strand
Strand 2
W
84 89anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
130 131first strand
Strand 2
W
122 123anti-parallel
Strand 3
W
157 158anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
337 338first strand
Strand 2
R
350 351anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
272 275first strand
Strand 2
U
257 269anti-parallel
Strand 3
U
278 284anti-parallel
Strand 4
V
59 72parallel
Strand 5
V
75 87anti-parallel
Strand 6
V
104 117anti-parallel
Strand 7
U
244 254parallel
Strand 8
U
257 269anti-parallel
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