Analysis of interatomic Contacts of Structural Units in PDB entry:
9PBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PBA entry

There are 12 chains in PDB entry 9PBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 203	PRO 740
B	MET 1	PRO 740
C	MET 1	PRO 740
D	MET 1	PRO 740
E	MET 1	PRO 740
F	ASP 212	PRO 740
G	THR 197	SER 259
H	SER 188	SER 259
I	MET 1	GLY 204
J	GLY 0	THR 286
K	GLY 0	GLN 288
L	GLY 0	THR 286

There are218 helices in PDB entry 9PBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	219	Right-handed 310
Helix 2	AA2	A	224	234	Right-handed alpha
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	265	277	Right-handed alpha
Helix 5	AA5	A	286	290	Right-handed 310
Helix 6	AA6	A	297	303	Right-handed alpha
Helix 7	AA7	A	306	316	Right-handed alpha
Helix 8	AA8	A	329	333	Right-handed 310
Helix 9	AA9	A	349	359	Right-handed alpha
Helix 10	AB1	A	399	418	Right-handed alpha
Helix 11	AB2	A	425	433	Right-handed alpha
Helix 12	AB3	A	438	458	Right-handed alpha
Helix 13	AB4	A	476	487	Right-handed alpha
Helix 14	AB5	A	495	503	Right-handed alpha
Helix 15	AB6	A	511	530	Right-handed alpha
Helix 16	AB7	A	549	559	Right-handed alpha
Helix 17	AB8	A	569	573	Right-handed 310
Helix 18	AB9	A	577	593	Right-handed alpha
Helix 19	AC1	A	619	630	Right-handed alpha
Helix 20	AC2	A	648	655	Right-handed alpha
Helix 21	AC3	A	672	684	Right-handed alpha
Helix 22	AC4	A	687	698	Right-handed alpha
Helix 23	AC5	A	708	719	Right-handed alpha
Helix 24	AC6	A	724	737	Right-handed alpha
Helix 25	AC7	B	13	19	Right-handed alpha
Helix 26	AC8	B	63	71	Right-handed alpha
Helix 27	AC9	B	86	91	Right-handed alpha
Helix 28	AD1	B	103	107	Right-handed 310
Helix 29	AD2	B	113	126	Right-handed alpha
Helix 30	AD3	B	214	218	Right-handed 310
Helix 31	AD4	B	223	235	Right-handed alpha
Helix 32	AD5	B	236	239	Right-handed 310
Helix 33	AD6	B	241	247	Right-handed alpha
Helix 34	AD7	B	265	275	Right-handed alpha
Helix 35	AD8	B	297	304	Right-handed alpha
Helix 36	AD9	B	306	316	Right-handed alpha
Helix 37	AE1	B	329	333	Right-handed 310
Helix 38	AE2	B	351	359	Right-handed alpha
Helix 39	AE3	B	399	411	Right-handed alpha
Helix 40	AE4	B	412	417	Right-handed alpha
Helix 41	AE5	B	437	455	Right-handed alpha
Helix 42	AE6	B	467	472	Right-handed alpha
Helix 43	AE7	B	476	485	Right-handed alpha
Helix 44	AE8	B	497	502	Right-handed alpha
Helix 45	AE9	B	513	528	Right-handed alpha
Helix 46	AF1	B	549	559	Right-handed alpha
Helix 47	AF2	B	569	573	Right-handed 310
Helix 48	AF3	B	577	592	Right-handed alpha
Helix 49	AF4	B	604	610	Right-handed alpha
Helix 50	AF5	B	619	630	Right-handed alpha
Helix 51	AF6	B	648	655	Right-handed alpha
Helix 52	AF7	B	673	684	Right-handed alpha
Helix 53	AF8	B	687	699	Right-handed alpha
Helix 54	AF9	B	706	718	Right-handed alpha
Helix 55	AG1	B	724	737	Right-handed alpha
Helix 56	AG2	C	13	20	Right-handed alpha
Helix 57	AG3	C	63	71	Right-handed alpha
Helix 58	AG4	C	86	91	Right-handed alpha
Helix 59	AG5	C	103	107	Right-handed 310
Helix 60	AG6	C	113	125	Right-handed alpha
Helix 61	AG7	C	214	219	Right-handed alpha
Helix 62	AG8	C	223	236	Right-handed alpha
Helix 63	AG9	C	241	249	Right-handed alpha
Helix 64	AH1	C	266	277	Right-handed alpha
Helix 65	AH2	C	299	304	Right-handed alpha
Helix 66	AH3	C	310	315	Right-handed alpha
Helix 67	AH4	C	329	333	Right-handed 310
Helix 68	AH5	C	349	359	Right-handed alpha
Helix 69	AH6	C	380	384	Right-handed 310
Helix 70	AH7	C	399	417	Right-handed alpha
Helix 71	AH8	C	425	433	Right-handed alpha
Helix 72	AH9	C	437	455	Right-handed alpha
Helix 73	AI1	C	469	473	Right-handed 310
Helix 74	AI2	C	476	487	Right-handed alpha
Helix 75	AI3	C	496	503	Right-handed alpha
Helix 76	AI4	C	512	531	Right-handed alpha
Helix 77	AI5	C	550	559	Right-handed alpha
Helix 78	AI6	C	577	593	Right-handed alpha
Helix 79	AI7	C	604	609	Right-handed alpha
Helix 80	AI8	C	648	655	Right-handed alpha
Helix 81	AI9	C	672	684	Right-handed alpha
Helix 82	AJ1	C	687	699	Right-handed alpha
Helix 83	AJ2	C	706	718	Right-handed alpha
Helix 84	AJ3	C	724	736	Right-handed alpha
Helix 85	AJ4	D	15	19	Right-handed 310
Helix 86	AJ5	D	63	71	Right-handed alpha
Helix 87	AJ6	D	114	125	Right-handed alpha
Helix 88	AJ7	D	214	219	Right-handed alpha
Helix 89	AJ8	D	223	234	Right-handed alpha
Helix 90	AJ9	D	241	249	Right-handed alpha
Helix 91	AK1	D	265	275	Right-handed alpha
Helix 92	AK2	D	297	306	Right-handed alpha
Helix 93	AK3	D	307	317	Right-handed alpha
Helix 94	AK4	D	345	359	Right-handed alpha
Helix 95	AK5	D	375	379	Right-handed 310
Helix 96	AK6	D	380	384	Right-handed 310
Helix 97	AK7	D	399	407	Right-handed alpha
Helix 98	AK8	D	411	417	Right-handed alpha
Helix 99	AK9	D	425	433	Right-handed alpha
Helix 100	AL1	D	437	457	Right-handed alpha
Helix 101	AL2	D	468	472	Right-handed 310
Helix 102	AL3	D	476	484	Right-handed alpha
Helix 103	AL4	D	497	501	Right-handed 310
Helix 104	AL5	D	512	531	Right-handed alpha
Helix 105	AL6	D	551	559	Right-handed alpha
Helix 106	AL7	D	569	573	Right-handed 310
Helix 107	AL8	D	577	595	Right-handed alpha
Helix 108	AL9	D	604	609	Right-handed alpha
Helix 109	AM1	D	621	630	Right-handed alpha
Helix 110	AM2	D	648	655	Right-handed alpha
Helix 111	AM3	D	672	684	Right-handed alpha
Helix 112	AM4	D	687	699	Right-handed alpha
Helix 113	AM5	D	706	718	Right-handed alpha
Helix 114	AM6	D	719	720	Right-handed 310
Helix 115	AM7	D	721	723	Right-handed 310
Helix 116	AM8	D	724	737	Right-handed alpha
Helix 117	AM9	E	15	19	Right-handed 310
Helix 118	AN1	E	63	71	Right-handed alpha
Helix 119	AN2	E	114	125	Right-handed alpha
Helix 120	AN3	E	214	219	Right-handed alpha
Helix 121	AN4	E	225	235	Right-handed alpha
Helix 122	AN5	E	241	249	Right-handed alpha
Helix 123	AN6	E	265	277	Right-handed alpha
Helix 124	AN7	E	297	304	Right-handed alpha
Helix 125	AN8	E	306	317	Right-handed alpha
Helix 126	AN9	E	329	333	Right-handed 310
Helix 127	AO1	E	345	359	Right-handed alpha
Helix 128	AO2	E	375	379	Right-handed 310
Helix 129	AO3	E	380	384	Right-handed 310
Helix 130	AO4	E	399	411	Right-handed alpha
Helix 131	AO5	E	411	417	Right-handed alpha
Helix 132	AO6	E	425	433	Right-handed alpha
Helix 133	AO7	E	437	455	Right-handed alpha
Helix 134	AO8	E	476	487	Right-handed alpha
Helix 135	AO9	E	511	530	Right-handed alpha
Helix 136	AP1	E	550	560	Right-handed alpha
Helix 137	AP2	E	577	593	Right-handed alpha
Helix 138	AP3	E	604	610	Right-handed alpha
Helix 139	AP4	E	619	630	Right-handed alpha
Helix 140	AP5	E	648	655	Right-handed alpha
Helix 141	AP6	E	672	684	Right-handed alpha
Helix 142	AP7	E	687	699	Right-handed alpha
Helix 143	AP8	E	706	718	Right-handed alpha
Helix 144	AP9	E	724	737	Right-handed alpha
Helix 145	AQ1	F	223	234	Right-handed alpha
Helix 146	AQ2	F	235	240	Right-handed alpha
Helix 147	AQ3	F	266	277	Right-handed alpha
Helix 148	AQ4	F	296	307	Right-handed alpha
Helix 149	AQ5	F	307	317	Right-handed alpha
Helix 150	AQ6	F	329	333	Right-handed 310
Helix 151	AQ7	F	346	359	Right-handed alpha
Helix 152	AQ8	F	375	379	Right-handed 310
Helix 153	AQ9	F	381	385	Right-handed 310
Helix 154	AR1	F	399	417	Right-handed alpha
Helix 155	AR2	F	425	433	Right-handed alpha
Helix 156	AR3	F	438	455	Right-handed alpha
Helix 157	AR4	F	468	473	Right-handed 310
Helix 158	AR5	F	476	486	Right-handed alpha
Helix 159	AR6	F	512	531	Right-handed alpha
Helix 160	AR7	F	548	561	Right-handed alpha
Helix 161	AR8	F	577	595	Right-handed alpha
Helix 162	AR9	F	604	609	Right-handed alpha
Helix 163	AS1	F	619	630	Right-handed alpha
Helix 164	AS2	F	648	655	Right-handed alpha
Helix 165	AS3	F	672	684	Right-handed alpha
Helix 166	AS4	F	687	699	Right-handed alpha
Helix 167	AS5	F	706	718	Right-handed alpha
Helix 168	AS6	F	724	737	Right-handed alpha
Helix 169	AS7	G	198	259	Right-handed alpha
Helix 170	AS8	H	189	259	Right-handed alpha
Helix 171	AS9	I	20	82	Right-handed alpha
Helix 172	AT1	I	143	203	Right-handed alpha
Helix 173	AT2	J	1	32	Right-handed alpha
Helix 174	AT3	J	35	55	Right-handed alpha
Helix 175	AT4	J	57	74	Right-handed alpha
Helix 176	AT5	J	77	95	Right-handed alpha
Helix 177	AT6	J	97	114	Right-handed alpha
Helix 178	AT7	J	116	135	Right-handed alpha
Helix 179	AT8	J	137	156	Right-handed alpha
Helix 180	AT9	J	160	175	Right-handed alpha
Helix 181	AU1	J	177	194	Right-handed alpha
Helix 182	AU2	J	198	215	Right-handed alpha
Helix 183	AU3	J	217	232	Right-handed alpha
Helix 184	AU4	J	233	237	Right-handed 310
Helix 185	AU5	J	238	254	Right-handed alpha
Helix 186	AU6	J	255	270	Right-handed alpha
Helix 187	AU7	J	273	285	Right-handed alpha
Helix 188	AU8	K	1	23	Right-handed alpha
Helix 189	AU9	K	39	55	Right-handed alpha
Helix 190	AV1	K	60	74	Right-handed alpha
Helix 191	AV2	K	78	96	Right-handed alpha
Helix 192	AV3	K	96	115	Right-handed alpha
Helix 193	AV4	K	116	134	Right-handed alpha
Helix 194	AV5	K	138	155	Right-handed alpha
Helix 195	AV6	K	157	175	Right-handed alpha
Helix 196	AV7	K	177	195	Right-handed alpha
Helix 197	AV8	K	198	217	Right-handed alpha
Helix 198	AV9	K	217	232	Right-handed alpha
Helix 199	AW1	K	232	238	Right-handed alpha
Helix 200	AW2	K	238	253	Right-handed alpha
Helix 201	AW3	K	255	270	Right-handed alpha
Helix 202	AW4	K	275	288	Right-handed alpha
Helix 203	AW5	L	1	23	Right-handed alpha
Helix 204	AW6	L	37	56	Right-handed alpha
Helix 205	AW7	L	57	75	Right-handed alpha
Helix 206	AW8	L	78	93	Right-handed alpha
Helix 207	AW9	L	96	115	Right-handed alpha
Helix 208	AX1	L	116	135	Right-handed alpha
Helix 209	AX2	L	137	155	Right-handed alpha
Helix 210	AX3	L	157	175	Right-handed alpha
Helix 211	AX4	L	177	195	Right-handed alpha
Helix 212	AX5	L	198	200	Right-handed 310
Helix 213	AX6	L	201	217	Right-handed alpha
Helix 214	AX7	L	220	232	Right-handed alpha
Helix 215	AX8	L	233	237	Right-handed 310
Helix 216	AX9	L	238	253	Right-handed alpha
Helix 217	AY1	L	255	270	Right-handed alpha
Helix 218	AY2	L	273	286	Right-handed alpha

There are 30 sheets in PDB entry 9PBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	323	326	parallel
Strand 3	A	367	373	parallel
Strand 4	A	256	259	parallel
Strand 5	A	391	394	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	600	602	parallel
Strand 3	A	640	646	parallel
Strand 4	A	536	542	parallel
Strand 5	A	663	666	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	59	62	parallel
Strand 3	B	21	24	anti-parallel
Strand 4	B	43	51	parallel
Strand 5	B	33	40	anti-parallel
Strand 6	B	77	82	anti-parallel
Strand 7	B	4	10	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	182	187	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	174	177	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	323	326	parallel
Strand 3	B	367	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	392	394	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	599	602	parallel
Strand 3	B	640	646	parallel
Strand 4	B	536	542	parallel
Strand 5	B	664	666	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	672	first strand
Strand 2	B	702	705	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	10	first strand
Strand 2	C	59	62	parallel
Strand 3	C	22	24	anti-parallel
Strand 4	C	43	51	parallel
Strand 5	C	34	40	anti-parallel
Strand 6	C	77	82	anti-parallel
Strand 7	C	4	10	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	143	154	anti-parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	182	187	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	174	176	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	323	326	parallel
Strand 3	C	367	373	parallel
Strand 4	C	256	259	parallel
Strand 5	C	391	394	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	464	465	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	598	602	parallel
Strand 3	C	640	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	9	first strand
Strand 2	D	59	61	parallel
Strand 3	D	21	24	anti-parallel
Strand 4	D	45	51	parallel
Strand 5	D	34	38	anti-parallel
Strand 6	D	77	82	anti-parallel
Strand 7	D	4	9	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	146	154	anti-parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	182	187	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	195	196	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	174	176	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	323	326	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	394	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	603	parallel
Strand 3	D	639	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	10	first strand
Strand 2	E	59	62	parallel
Strand 3	E	21	24	anti-parallel
Strand 4	E	45	51	parallel
Strand 5	E	34	38	anti-parallel
Strand 6	E	77	82	anti-parallel
Strand 7	E	4	10	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	145	154	anti-parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	182	187	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	195	196	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	174	176	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	323	327	parallel
Strand 3	E	367	373	parallel
Strand 4	E	256	259	parallel
Strand 5	E	391	392	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	458	first strand
Strand 2	E	464	465	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	568	first strand
Strand 2	E	597	603	parallel
Strand 3	E	639	645	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	323	327	parallel
Strand 3	F	367	373	parallel
Strand 4	F	256	259	parallel
Strand 5	F	391	392	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	458	first strand
Strand 2	F	464	465	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	603	parallel
Strand 3	F	639	646	parallel
Strand 4	F	536	542	parallel
Strand 5	F	663	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PBA