Analysis of interatomic Contacts of Structural Units in PDB entry:
9PBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PBI entry

There are 2 chains in PDB entry 9PBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
3
 ASP 287PHE 1132
6
 MET 1GLY 974
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9PBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
3
287 290Right-handed 310
Helix 2
AA2
3
291 304Right-handed alpha
Helix 3
AA3
3
312 318Right-handed alpha
Helix 4
AA4
3
319 324Right-handed alpha
Helix 5
AA5
3
337 355Right-handed alpha
Helix 6
AA6
3
367 380Right-handed alpha
Helix 7
AA7
3
380 389Right-handed alpha
Helix 8
AA8
3
393 402Right-handed alpha
Helix 9
AA9
3
404 418Right-handed alpha
Helix 10
AB1
3
438 449Right-handed alpha
Helix 11
AB2
3
456 462Right-handed 310
Helix 12
AB3
3
493 503Right-handed alpha
Helix 13
AB4
3
520 528Right-handed alpha
Helix 14
AB5
3
529 532Right-handed 310
Helix 15
AB6
3
533 544Right-handed alpha
Helix 16
AB7
3
545 554Right-handed alpha
Helix 17
AB8
3
558 569Right-handed alpha
Helix 18
AB9
3
570 572Right-handed 310
Helix 19
AC1
3
573 582Right-handed alpha
Helix 20
AC2
3
585 597Right-handed alpha
Helix 21
AC3
3
598 608Right-handed alpha
Helix 22
AC4
3
613 638Right-handed alpha
Helix 23
AC5
3
640 648Right-handed alpha
Helix 24
AC6
3
656 664Right-handed alpha
Helix 25
AC7
3
683 701Right-handed alpha
Helix 26
AC8
3
706 712Right-handed alpha
Helix 27
AC9
3
714 735Right-handed alpha
Helix 28
AD1
3
740 745Right-handed alpha
Helix 29
AD2
3
746 758Right-handed 310
Helix 30
AD3
3
759 764Right-handed alpha
Helix 31
AD4
3
766 775Right-handed alpha
Helix 32
AD5
3
783 796Right-handed alpha
Helix 33
AD6
3
803 812Right-handed alpha
Helix 34
AD7
3
815 825Right-handed alpha
Helix 35
AD8
3
844 846Right-handed 310
Helix 36
AD9
3
847 858Right-handed alpha
Helix 37
AE1
3
867 872Right-handed alpha
Helix 38
AE2
3
894 909Right-handed alpha
Helix 39
AE3
3
915 928Right-handed alpha
Helix 40
AE4
3
929 945Right-handed alpha
Helix 41
AE5
3
951 955Right-handed 310
Helix 42
AE6
3
962 977Right-handed alpha
Helix 43
AE7
3
979 992Right-handed alpha
Helix 44
AE8
3
1079 1083Right-handed 310
Helix 45
AE9
3
1087 1102Right-handed alpha
Helix 46
AF1
3
1109 1132Right-handed alpha
Helix 47
AF2
6
273 278Right-handed 310
Helix 48
AF3
6
316 321Right-handed alpha
Helix 49
AF4
6
397 405Right-handed alpha
Helix 50
AF5
6
414 419Right-handed 310
Helix 51
AF6
6
470 474Right-handed 310
Helix 52
AF7
6
503 507Right-handed 310
Helix 53
AF8
6
541 543Right-handed 310
Helix 54
AF9
6
544 562Right-handed alpha
Helix 55
AG1
6
567 584Right-handed alpha
Helix 56
AG2
6
584 603Right-handed alpha
Helix 57
AG3
6
610 620Right-handed alpha
Helix 58
AG4
6
621 633Right-handed alpha
Helix 59
AG5
6
641 677Right-handed alpha
Helix 60
AG6
6
683 719Right-handed alpha
Helix 61
AG7
6
727 729Right-handed 310
Helix 62
AG8
6
730 737Right-handed alpha
Helix 63
AG9
6
738 762Right-handed alpha
Helix 64
AH1
6
767 784Right-handed alpha
Helix 65
AH2
6
787 809Right-handed alpha
Helix 66
AH3
6
812 821Right-handed alpha
Helix 67
AH4
6
825 827Right-handed 310
Helix 68
AH5
6
828 843Right-handed alpha
Helix 69
AH6
6
878 882Right-handed 310
Helix 70
AH7
6
891 895Right-handed 310
Helix 71
AH8
6
914 920Right-handed alpha
Helix 72
AH9
6
940 944Right-handed 310
Helix 73
AI1
6
954 961Right-handed 310
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There are 15 sheets in PDB entry 9PBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
8 10first strand
Strand 2
6
16 19anti-parallel
Strand 3
6
28 31anti-parallel
Strand 4
6
47 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
33 36first strand
Strand 2
6
40 43anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
101 102first strand
Strand 2
6
178 179parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
105 107first strand
Strand 2
6
124 125anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
120 121first strand
Strand 2
6
133 135anti-parallel
Strand 3
6
148 150anti-parallel
Strand 4
6
164 165anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
194 195first strand
Strand 2
6
235 242anti-parallel
Strand 3
6
247 254anti-parallel
Strand 4
6
260 261anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
194 195first strand
Strand 2
6
235 242anti-parallel
Strand 3
6
247 254anti-parallel
Strand 4
6
264 266anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
209 211first strand
Strand 2
6
216 218anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
283 288first strand
Strand 2
6
295 301anti-parallel
Strand 3
6
306 310anti-parallel
Strand 4
6
335 339anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
313 315first strand
Strand 2
6
330 332anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
351 359first strand
Strand 2
6
371 378anti-parallel
Strand 3
6
383 396anti-parallel
Strand 4
6
420 429anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
351 359first strand
Strand 2
6
371 378anti-parallel
Strand 3
6
383 396anti-parallel
Strand 4
6
433 435anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
439 441first strand
Strand 2
6
451 455anti-parallel
Strand 3
6
460 463anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
509 512first strand
Strand 2
6
518 522anti-parallel
Strand 3
6
530 533anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
932 933first strand
Strand 2
6
924 926anti-parallel
Strand 3
6
969 971anti-parallel
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