Analysis of interatomic Contacts of Structural Units in PDB entry:
9PC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PC7 entry

There are 17 chains in PDB entry 9PC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
b	GLY 30	LYS 173
f	MET 1	LEU 210
h	THR 31	PRO 207
n	MET 1	THR 140
o	PRO 18	ALA 126
d	THR 15	VAL 687
a	MET 1	TYR 202
c	MET 1	LYS 115
e	MET 1	ILE 307
g	GLN 4	LYS 119
i	SER 11	SER 214
k	MET 1	SER 148
l	GLN 89	LYS 832
m	TYR 15	SER 148
A	PRO 1572	THR 1678
j	GLN 4	GLN 148
p	MET 1	SER 566

There are120 helices in PDB entry 9PC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	30	55	Right-handed alpha
Helix 2	AA2	b	61	86	Right-handed alpha
Helix 3	AA3	b	106	114	Right-handed alpha
Helix 4	AA4	b	119	133	Right-handed alpha
Helix 5	AA5	b	142	170	Right-handed alpha
Helix 6	AA6	f	15	24	Right-handed alpha
Helix 7	AA7	f	88	95	Right-handed alpha
Helix 8	AA8	f	103	111	Right-handed alpha
Helix 9	AA9	f	162	177	Right-handed alpha
Helix 10	AB1	f	195	209	Right-handed alpha
Helix 11	AB2	h	32	40	Right-handed alpha
Helix 12	AB3	h	41	62	Right-handed alpha
Helix 13	AB4	h	68	115	Right-handed alpha
Helix 14	AB5	h	116	126	Right-handed alpha
Helix 15	AB6	h	132	143	Right-handed alpha
Helix 16	AB7	h	151	160	Right-handed alpha
Helix 17	AB8	h	184	189	Right-handed alpha
Helix 18	AB9	h	191	196	Right-handed alpha
Helix 19	AC1	n	3	29	Right-handed alpha
Helix 20	AC2	n	51	78	Right-handed alpha
Helix 21	AC3	n	86	96	Right-handed alpha
Helix 22	AC4	n	102	140	Right-handed alpha
Helix 23	AC5	o	21	32	Right-handed alpha
Helix 24	AC6	o	35	45	Right-handed alpha
Helix 25	AC7	o	45	50	Right-handed alpha
Helix 26	AC8	o	54	61	Right-handed alpha
Helix 27	AC9	o	62	65	Right-handed 310
Helix 28	AD1	o	76	90	Right-handed alpha
Helix 29	AD2	o	104	126	Right-handed alpha
Helix 30	AD3	d	22	29	Right-handed 310
Helix 31	AD4	d	89	94	Right-handed alpha
Helix 32	AD5	d	98	110	Right-handed alpha
Helix 33	AD6	d	120	132	Right-handed alpha
Helix 34	AD7	d	198	229	Right-handed alpha
Helix 35	AD8	d	230	232	Right-handed 310
Helix 36	AD9	d	233	240	Right-handed alpha
Helix 37	AE1	d	242	249	Right-handed alpha
Helix 38	AE2	d	265	314	Right-handed alpha
Helix 39	AE3	d	341	345	Right-handed 310
Helix 40	AE4	d	380	386	Right-handed alpha
Helix 41	AE5	d	417	423	Right-handed alpha
Helix 42	AE6	d	424	450	Right-handed alpha
Helix 43	AE7	d	452	455	Right-handed 310
Helix 44	AE8	d	495	499	Right-handed 310
Helix 45	AE9	d	500	525	Right-handed alpha
Helix 46	AF1	d	541	570	Right-handed alpha
Helix 47	AF2	d	593	605	Right-handed alpha
Helix 48	AF3	d	606	611	Right-handed alpha
Helix 49	AF4	d	666	687	Right-handed alpha
Helix 50	AF5	a	5	7	Right-handed 310
Helix 51	AF6	a	13	18	Right-handed alpha
Helix 52	AF7	a	26	33	Right-handed alpha
Helix 53	AF8	a	42	56	Right-handed alpha
Helix 54	AF9	a	89	96	Right-handed alpha
Helix 55	AG1	a	97	106	Right-handed alpha
Helix 56	AG2	a	167	189	Right-handed alpha
Helix 57	AG3	a	190	192	Right-handed 310
Helix 58	AG4	c	3	22	Right-handed alpha
Helix 59	AG5	c	22	41	Right-handed alpha
Helix 60	AG6	c	46	75	Right-handed alpha
Helix 61	AG7	c	93	110	Right-handed alpha
Helix 62	AG8	e	15	28	Right-handed alpha
Helix 63	AG9	e	77	81	Right-handed 310
Helix 64	AH1	e	86	93	Right-handed 310
Helix 65	AH2	e	100	108	Right-handed alpha
Helix 66	AH3	e	199	206	Right-handed alpha
Helix 67	AH4	e	225	227	Right-handed 310
Helix 68	AH5	e	264	282	Right-handed alpha
Helix 69	AH6	e	293	297	Right-handed 310
Helix 70	AH7	g	5	30	Right-handed alpha
Helix 71	AH8	g	47	85	Right-handed alpha
Helix 72	AH9	g	101	118	Right-handed alpha
Helix 73	AI1	i	17	23	Right-handed 310
Helix 74	AI2	i	24	43	Right-handed alpha
Helix 75	AI3	i	91	95	Right-handed 310
Helix 76	AI4	i	112	138	Right-handed alpha
Helix 77	AI5	i	143	214	Right-handed alpha
Helix 78	AI6	k	2	38	Right-handed alpha
Helix 79	AI7	k	42	68	Right-handed alpha
Helix 80	AI8	k	81	89	Right-handed alpha
Helix 81	AI9	k	95	133	Right-handed alpha
Helix 82	AJ1	k	136	147	Right-handed alpha
Helix 83	AJ2	l	91	116	Right-handed alpha
Helix 84	AJ3	l	122	154	Right-handed alpha
Helix 85	AJ4	l	158	194	Right-handed alpha
Helix 86	AJ5	l	199	209	Right-handed alpha
Helix 87	AJ6	l	242	260	Right-handed alpha
Helix 88	AJ7	l	263	267	Right-handed 310
Helix 89	AJ8	l	344	358	Right-handed alpha
Helix 90	AJ9	l	365	390	Right-handed alpha
Helix 91	AK1	l	444	449	Right-handed alpha
Helix 92	AK2	l	463	486	Right-handed alpha
Helix 93	AK3	l	530	542	Right-handed alpha
Helix 94	AK4	l	545	571	Right-handed alpha
Helix 95	AK5	l	681	683	Right-handed 310
Helix 96	AK6	l	684	711	Right-handed alpha
Helix 97	AK7	l	719	725	Right-handed alpha
Helix 98	AK8	l	729	734	Right-handed alpha
Helix 99	AK9	l	749	753	Right-handed alpha
Helix 100	AL1	l	795	798	Right-handed 310
Helix 101	AL2	l	821	832	Right-handed alpha
Helix 102	AL3	m	40	45	Right-handed alpha
Helix 103	AL4	m	64	69	Right-handed alpha
Helix 104	AL5	m	134	148	Right-handed alpha
Helix 105	AL6	j	5	16	Right-handed alpha
Helix 106	AL7	j	65	79	Right-handed alpha
Helix 107	AL8	j	86	89	Right-handed 310
Helix 108	AL9	j	90	98	Right-handed alpha
Helix 109	AM1	j	118	146	Right-handed alpha
Helix 110	AM2	p	7	22	Right-handed alpha
Helix 111	AM3	p	27	39	Right-handed alpha
Helix 112	AM4	p	103	110	Right-handed alpha
Helix 113	AM5	p	114	130	Right-handed alpha
Helix 114	AM6	p	152	157	Right-handed 310
Helix 115	AM7	p	164	182	Right-handed alpha
Helix 116	AM8	p	279	281	Right-handed 310
Helix 117	AM9	p	299	303	Right-handed 310
Helix 118	AN1	p	337	350	Right-handed alpha
Helix 119	AN2	p	351	361	Right-handed alpha
Helix 120	AN3	p	550	566	Right-handed alpha

There are 24 sheets in PDB entry 9PC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	93	95	first strand
Strand 2	d	256	258	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	182	185	first strand
Strand 2	f	3	9	anti-parallel
Strand 3	f	148	157	anti-parallel
Strand 4	f	135	143	anti-parallel
Strand 5	f	116	132	anti-parallel
Strand 6	f	37	44	anti-parallel
Strand 7	f	56	62	anti-parallel
Strand 8	f	68	72	anti-parallel
Strand 9	f	76	81	anti-parallel
Strand 10	e	181	195	anti-parallel
Strand 11	e	2	12	anti-parallel
Strand 12	e	250	259	anti-parallel
Strand 13	e	229	237	anti-parallel
Strand 14	e	244	245	anti-parallel

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There are 16 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	182	185	first strand
Strand 2	f	3	9	anti-parallel
Strand 3	f	148	157	anti-parallel
Strand 4	f	135	143	anti-parallel
Strand 5	f	116	132	anti-parallel
Strand 6	f	37	44	anti-parallel
Strand 7	f	56	62	anti-parallel
Strand 8	f	68	72	anti-parallel
Strand 9	f	76	81	anti-parallel
Strand 10	e	181	195	anti-parallel
Strand 11	e	165	169	anti-parallel
Strand 12	e	64	68	anti-parallel
Strand 13	e	32	43	anti-parallel
Strand 14	e	209	223	anti-parallel
Strand 15	e	229	237	anti-parallel
Strand 16	e	244	245	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	323	326	first strand
Strand 2	d	333	338	anti-parallel
Strand 3	d	354	359	anti-parallel
Strand 4	d	366	370	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	403	408	first strand
Strand 2	d	387	396	anti-parallel
Strand 3	d	472	480	anti-parallel
Strand 4	d	464	468	anti-parallel
Strand 5	d	457	461	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	575	578	first strand
Strand 2	d	614	620	anti-parallel
Strand 3	d	630	636	anti-parallel
Strand 4	d	644	645	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	575	578	first strand
Strand 2	d	614	620	anti-parallel
Strand 3	d	630	636	anti-parallel
Strand 4	d	648	650	anti-parallel
Strand 5	d	660	661	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	9	11	first strand
Strand 2	A	1585	1587	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	112	121	first strand
Strand 2	a	125	133	anti-parallel
Strand 3	a	148	156	anti-parallel
Strand 4	a	159	162	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	193	195	first strand
Strand 2	a	199	201	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	75	78	first strand
Strand 2	i	81	84	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	269	272	first strand
Strand 2	l	275	280	anti-parallel
Strand 3	l	284	289	anti-parallel
Strand 4	l	298	304	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	400	405	first strand
Strand 2	l	410	415	anti-parallel
Strand 3	l	425	431	anti-parallel
Strand 4	l	438	443	anti-parallel
Strand 5	l	456	457	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	500	504	first strand
Strand 2	l	510	517	anti-parallel
Strand 3	l	524	526	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	575	576	first strand
Strand 2	l	623	628	anti-parallel
Strand 3	l	637	644	anti-parallel
Strand 4	l	649	661	anti-parallel
Strand 5	l	664	670	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	575	576	first strand
Strand 2	l	623	628	anti-parallel
Strand 3	l	637	644	anti-parallel
Strand 4	l	649	661	anti-parallel
Strand 5	l	676	679	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	715	717	first strand
Strand 2	l	742	748	anti-parallel
Strand 3	l	766	772	anti-parallel
Strand 4	l	777	783	anti-parallel
Strand 5	l	809	815	anti-parallel
Strand 6	l	800	802	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	45	46	first strand
Strand 2	p	51	53	anti-parallel
Strand 3	p	61	68	anti-parallel
Strand 4	p	73	81	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	91	92	first strand
Strand 2	p	101	102	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	187	188	first strand
Strand 2	p	198	203	anti-parallel
Strand 3	p	209	218	anti-parallel
Strand 4	p	253	258	anti-parallel
Strand 5	p	322	329	anti-parallel
Strand 6	p	273	274	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	187	188	first strand
Strand 2	p	198	203	anti-parallel
Strand 3	p	209	218	anti-parallel
Strand 4	p	253	258	anti-parallel
Strand 5	p	322	329	anti-parallel
Strand 6	p	283	287	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	227	228	first strand
Strand 2	p	249	250	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	231	234	first strand
Strand 2	p	239	242	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	312	316	first strand
Strand 2	p	528	532	parallel
Strand 3	p	536	539	anti-parallel
Strand 4	p	543	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PC7