Analysis of interatomic Contacts of Structural Units in PDB entry:
9PD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PD3 entry

There are 17 chains in PDB entry 9PD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 52	LEU 722
B	MET 1	LEU 738
C	GLN 398	ARG 542
D	ARG 17	SER 462
E	TRP 19	HIS 387
F	ASP 6	PHE 289
G	VAL 4	THR 69
H	SER 892	ARG 908
K	VAL 24	MET 273
L	G 25	G 62
M	G 39	C 70
N	THR 440	MET 616
O	ALA 43	THR 267
P	MET 1	ASP 121
Q	ALA 13	SER 904
R	SER 100	LYS 295
S	ILE 188	LEU 361

There are176 helices in PDB entry 9PD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	103	Right-handed alpha
Helix 2	AA2	A	120	128	Right-handed alpha
Helix 3	AA3	A	133	142	Right-handed alpha
Helix 4	AA4	A	150	158	Right-handed alpha
Helix 5	AA5	A	182	190	Right-handed alpha
Helix 6	AA6	A	192	196	Right-handed alpha
Helix 7	AA7	A	277	286	Right-handed alpha
Helix 8	AA8	A	318	327	Right-handed alpha
Helix 9	AA9	A	346	357	Right-handed alpha
Helix 10	AB1	A	368	381	Right-handed alpha
Helix 11	AB2	A	386	388	Right-handed alpha
Helix 12	AB3	A	421	432	Right-handed alpha
Helix 13	AB4	A	443	445	Right-handed 310
Helix 14	AB5	A	452	457	Right-handed alpha
Helix 15	AB6	A	477	483	Right-handed 310
Helix 16	AB7	A	493	499	Right-handed alpha
Helix 17	AB8	A	516	522	Right-handed alpha
Helix 18	AB9	A	531	534	Right-handed alpha
Helix 19	AC1	A	538	552	Right-handed alpha
Helix 20	AC2	A	565	575	Right-handed alpha
Helix 21	AC3	A	586	598	Right-handed alpha
Helix 22	AC4	A	633	641	Right-handed alpha
Helix 23	AC5	A	669	676	Right-handed alpha
Helix 24	AC6	A	678	683	Right-handed alpha
Helix 25	AC7	A	706	718	Right-handed alpha
Helix 26	AC8	B	19	33	Right-handed alpha
Helix 27	AC9	B	48	59	Right-handed alpha
Helix 28	AD1	B	77	98	Right-handed alpha
Helix 29	AD2	B	112	114	Right-handed 310
Helix 30	AD3	B	119	122	Right-handed alpha
Helix 31	AD4	B	127	138	Right-handed alpha
Helix 32	AD5	B	142	148	Right-handed alpha
Helix 33	AD6	B	156	162	Right-handed alpha
Helix 34	AD7	B	177	187	Right-handed alpha
Helix 35	AD8	B	191	197	Right-handed alpha
Helix 36	AD9	B	209	211	Right-handed 310
Helix 37	AE1	B	215	221	Right-handed alpha
Helix 38	AE2	B	240	247	Right-handed alpha
Helix 39	AE3	B	253	283	Right-handed alpha
Helix 40	AE4	B	322	345	Right-handed alpha
Helix 41	AE5	B	357	362	Right-handed alpha
Helix 42	AE6	B	369	373	Right-handed alpha
Helix 43	AE7	B	375	386	Right-handed alpha
Helix 44	AE8	B	395	409	Right-handed 310
Helix 45	AE9	B	440	442	Right-handed 310
Helix 46	AF1	B	444	450	Right-handed alpha
Helix 47	AF2	B	464	470	Right-handed alpha
Helix 48	AF3	B	514	527	Right-handed alpha
Helix 49	AF4	B	542	554	Right-handed alpha
Helix 50	AF5	B	558	564	Right-handed alpha
Helix 51	AF6	B	574	589	Right-handed alpha
Helix 52	AF7	B	604	607	Right-handed alpha
Helix 53	AF8	B	633	642	Right-handed alpha
Helix 54	AF9	B	648	667	Right-handed alpha
Helix 55	AG1	B	682	685	Right-handed 310
Helix 56	AG2	B	687	690	Right-handed alpha
Helix 57	AG3	B	695	701	Right-handed alpha
Helix 58	AG4	B	704	706	Right-handed 310
Helix 59	AG5	B	710	725	Right-handed alpha
Helix 60	AG6	B	730	736	Right-handed alpha
Helix 61	AG7	C	399	412	Right-handed alpha
Helix 62	AG8	C	424	434	Right-handed alpha
Helix 63	AG9	C	455	478	Right-handed alpha
Helix 64	AH1	C	484	515	Right-handed alpha
Helix 65	AH2	C	521	541	Right-handed alpha
Helix 66	AH3	D	19	24	Right-handed alpha
Helix 67	AH4	D	28	36	Right-handed alpha
Helix 68	AH5	D	38	47	Right-handed alpha
Helix 69	AH6	D	50	58	Right-handed alpha
Helix 70	AH7	D	68	74	Right-handed alpha
Helix 71	AH8	D	80	93	Right-handed alpha
Helix 72	AH9	D	112	122	Right-handed alpha
Helix 73	AI1	D	145	164	Right-handed alpha
Helix 74	AI2	D	173	182	Right-handed alpha
Helix 75	AI3	D	198	205	Right-handed alpha
Helix 76	AI4	D	208	222	Right-handed alpha
Helix 77	AI5	D	224	226	Right-handed alpha
Helix 78	AI6	D	232	241	Right-handed alpha
Helix 79	AI7	D	256	268	Right-handed alpha
Helix 80	AI8	D	285	288	Right-handed alpha
Helix 81	AI9	D	322	329	Right-handed alpha
Helix 82	AJ1	D	348	357	Right-handed alpha
Helix 83	AJ2	D	361	371	Right-handed alpha
Helix 84	AJ3	D	374	376	Right-handed 310
Helix 85	AJ4	D	385	397	Right-handed alpha
Helix 86	AJ5	D	415	428	Right-handed alpha
Helix 87	AJ6	D	448	461	Right-handed alpha
Helix 88	AJ7	E	22	24	Right-handed 310
Helix 89	AJ8	E	69	72	Right-handed 310
Helix 90	AJ9	E	80	98	Right-handed alpha
Helix 91	AK1	E	124	136	Right-handed alpha
Helix 92	AK2	E	145	156	Right-handed alpha
Helix 93	AK3	E	186	191	Right-handed alpha
Helix 94	AK4	E	206	215	Right-handed alpha
Helix 95	AK5	E	225	234	Right-handed alpha
Helix 96	AK6	E	273	277	Right-handed alpha
Helix 97	AK7	E	315	325	Right-handed alpha
Helix 98	AK8	E	369	378	Right-handed alpha
Helix 99	AK9	E	383	386	Right-handed alpha
Helix 100	AL1	F	19	27	Right-handed alpha
Helix 101	AL2	F	34	51	Right-handed alpha
Helix 102	AL3	F	102	120	Right-handed alpha
Helix 103	AL4	F	133	150	Right-handed alpha
Helix 104	AL5	F	174	186	Right-handed alpha
Helix 105	AL6	F	201	210	Right-handed alpha
Helix 106	AL7	F	220	231	Right-handed alpha
Helix 107	AL8	F	235	240	Right-handed alpha
Helix 108	AL9	F	284	288	Right-handed 310
Helix 109	AM1	G	14	26	Right-handed alpha
Helix 110	AM2	G	47	63	Right-handed 310
Helix 111	AM3	H	892	901	Right-handed alpha
Helix 112	AM4	K	27	40	Right-handed alpha
Helix 113	AM5	K	116	120	Right-handed alpha
Helix 114	AM6	K	141	147	Right-handed alpha
Helix 115	AM7	K	153	156	Right-handed alpha
Helix 116	AM8	K	183	194	Right-handed alpha
Helix 117	AM9	K	197	230	Right-handed alpha
Helix 118	AN1	N	444	450	Right-handed alpha
Helix 119	AN2	N	532	539	Right-handed alpha
Helix 120	AN3	N	543	552	Right-handed alpha
Helix 121	AN4	N	554	564	Right-handed alpha
Helix 122	AN5	N	599	615	Right-handed alpha
Helix 123	AN6	O	51	55	Right-handed alpha
Helix 124	AN7	O	152	169	Right-handed 310
Helix 125	AN8	O	210	218	Right-handed alpha
Helix 126	AN9	O	227	232	Right-handed alpha
Helix 127	AO1	O	242	252	Right-handed alpha
Helix 128	AO2	P	4	6	Right-handed 310
Helix 129	AO3	P	14	19	Right-handed 310
Helix 130	AO4	P	96	108	Right-handed alpha
Helix 131	AO5	Q	17	28	Right-handed alpha
Helix 132	AO6	Q	41	51	Right-handed alpha
Helix 133	AO7	Q	66	79	Right-handed alpha
Helix 134	AO8	Q	94	103	Right-handed alpha
Helix 135	AO9	Q	111	119	Right-handed alpha
Helix 136	AP1	Q	136	140	Right-handed 310
Helix 137	AP2	Q	144	155	Right-handed alpha
Helix 138	AP3	Q	169	172	Right-handed alpha
Helix 139	AP4	Q	178	185	Right-handed alpha
Helix 140	AP5	Q	201	206	Right-handed alpha
Helix 141	AP6	Q	223	243	Right-handed alpha
Helix 142	AP7	Q	260	269	Right-handed 310
Helix 143	AP8	Q	274	276	Right-handed 310
Helix 144	AP9	Q	280	300	Right-handed alpha
Helix 145	AQ1	Q	303	319	Right-handed alpha
Helix 146	AQ2	Q	334	342	Right-handed alpha
Helix 147	AQ3	Q	379	397	Right-handed alpha
Helix 148	AQ4	Q	414	425	Right-handed alpha
Helix 149	AQ5	Q	428	439	Right-handed alpha
Helix 150	AQ6	Q	563	572	Right-handed 310
Helix 151	AQ7	Q	585	597	Right-handed alpha
Helix 152	AQ8	Q	614	639	Right-handed alpha
Helix 153	AQ9	Q	688	692	Right-handed 310
Helix 154	AR1	Q	695	702	Right-handed alpha
Helix 155	AR2	Q	729	737	Right-handed alpha
Helix 156	AR3	Q	741	751	Right-handed alpha
Helix 157	AR4	Q	784	794	Right-handed alpha
Helix 158	AR5	Q	806	816	Right-handed alpha
Helix 159	AR6	Q	848	854	Right-handed 310
Helix 160	AR7	Q	864	869	Right-handed alpha
Helix 161	AR8	Q	873	877	Right-handed alpha
Helix 162	AR9	Q	881	888	Right-handed alpha
Helix 163	AS1	Q	892	901	Right-handed alpha
Helix 164	AS2	R	105	107	Right-handed 310
Helix 165	AS3	R	143	148	Right-handed alpha
Helix 166	AS4	R	152	160	Right-handed alpha
Helix 167	AS5	R	180	192	Right-handed alpha
Helix 168	AS6	R	202	214	Right-handed alpha
Helix 169	AS7	R	231	240	Right-handed alpha
Helix 170	AS8	R	247	256	Right-handed alpha
Helix 171	AS9	R	262	265	Right-handed alpha
Helix 172	AT1	R	268	273	Right-handed alpha
Helix 173	AT2	R	279	289	Right-handed alpha
Helix 174	AT3	S	192	195	Right-handed 310
Helix 175	AT4	S	198	214	Right-handed alpha
Helix 176	AT5	S	226	256	Right-handed alpha

There are 39 sheets in PDB entry 9PD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	D	333	338	parallel
Strand 3	D	341	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	309	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	84	87	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	268	272	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	438	441	parallel
Strand 5	A	463	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	690	first strand
Strand 2	A	505	512	parallel
Strand 3	A	657	664	parallel
Strand 4	A	622	626	parallel
Strand 5	A	558	561	parallel
Strand 6	A	604	607	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	8	11	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	453	458	parallel
Strand 3	B	229	234	parallel
Strand 4	B	69	73	parallel
Strand 5	B	204	207	parallel
Strand 6	B	106	108	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	351	353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	K	59	61	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	675	680	parallel
Strand 3	B	617	621	parallel
Strand 4	B	535	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	100	first strand
Strand 2	D	106	110	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	279	284	anti-parallel
Strand 3	D	270	272	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	409	first strand
Strand 2	D	440	443	anti-parallel
Strand 3	D	431	435	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	195	197	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	118	first strand
Strand 2	E	103	110	anti-parallel
Strand 3	E	59	66	parallel
Strand 4	E	164	171	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	291	first strand
Strand 2	E	295	298	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	356	360	anti-parallel
Strand 3	E	364	367	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	305	first strand
Strand 2	E	309	312	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	343	345	first strand
Strand 2	E	349	352	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	7	16	parallel
Strand 4	F	156	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	255	first strand
Strand 2	F	259	262	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	275	first strand
Strand 2	F	264	268	anti-parallel
Strand 3	E	249	253	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	11	first strand
Strand 2	G	42	45	anti-parallel
Strand 3	G	36	39	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	103	105	first strand
Strand 2	K	109	112	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	138	140	first strand
Strand 2	K	178	182	anti-parallel
Strand 3	K	165	167	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	248	252	first strand
Strand 2	K	256	260	anti-parallel
Strand 3	K	267	271	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	526	531	first strand
Strand 2	N	516	521	anti-parallel
Strand 3	N	460	471	anti-parallel
Strand 4	N	569	581	anti-parallel
Strand 5	N	584	596	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	477	480	first strand
Strand 2	N	511	514	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	490	492	first strand
Strand 2	N	498	500	anti-parallel
Strand 3	N	505	507	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	60	first strand
Strand 2	O	63	65	anti-parallel
Strand 3	O	69	71	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	74	80	first strand
Strand 2	O	124	135	anti-parallel
Strand 3	O	138	148	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	85	first strand
Strand 2	O	89	94	anti-parallel
Strand 3	O	102	107	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	54	first strand
Strand 2	P	40	44	anti-parallel
Strand 3	P	24	34	anti-parallel
Strand 4	P	66	73	anti-parallel
Strand 5	P	79	86	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	190	192	first strand
Strand 2	Q	32	34	parallel
Strand 3	Q	160	165	parallel
Strand 4	Q	128	134	parallel
Strand 5	Q	58	62	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	86	88	first strand
Strand 2	Q	107	109	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	211	217	first strand
Strand 2	Q	604	611	parallel
Strand 3	Q	577	581	parallel
Strand 4	Q	407	411	parallel
Strand 5	Q	552	556	parallel
Strand 6	S	358	360	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	705	709	first strand
Strand 2	Q	683	687	parallel
Strand 3	Q	715	719	parallel
Strand 4	Q	722	728	parallel
Strand 5	Q	754	761	parallel
Strand 6	Q	799	803	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	101	104	first strand
Strand 2	R	121	124	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	130	132	first strand
Strand 2	R	136	142	anti-parallel
Strand 3	R	166	172	parallel
Strand 4	R	195	199	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PD3