Analysis of interatomic Contacts of Structural Units in PDB entry:
9PDB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PDB entry

There are 7 chains in PDB entry 9PDB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 208	PRO 740
B	SER 207	PRO 740
C	GLN 206	PRO 740
D	ARG 205	PRO 740
E	GLN 206	PRO 740
F	ILE 209	PRO 740
G	UNK 4	UNK 17

There are159 helices in PDB entry 9PDB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	224	234	Right-handed alpha
Helix 2	AA2	A	241	249	Right-handed alpha
Helix 3	AA3	A	266	277	Right-handed alpha
Helix 4	AA4	A	297	304	Right-handed alpha
Helix 5	AA5	A	306	317	Right-handed alpha
Helix 6	AA6	A	329	333	Right-handed 310
Helix 7	AA7	A	348	359	Right-handed alpha
Helix 8	AA8	A	380	384	Right-handed 310
Helix 9	AA9	A	399	411	Right-handed alpha
Helix 10	AB1	A	411	417	Right-handed alpha
Helix 11	AB2	A	426	433	Right-handed alpha
Helix 12	AB3	A	438	463	Right-handed alpha
Helix 13	AB4	A	466	472	Right-handed alpha
Helix 14	AB5	A	477	487	Right-handed alpha
Helix 15	AB6	A	495	500	Right-handed alpha
Helix 16	AB7	A	511	530	Right-handed alpha
Helix 17	AB8	A	548	560	Right-handed alpha
Helix 18	AB9	A	569	573	Right-handed 310
Helix 19	AC1	A	577	593	Right-handed alpha
Helix 20	AC2	A	604	610	Right-handed alpha
Helix 21	AC3	A	619	630	Right-handed alpha
Helix 22	AC4	A	648	655	Right-handed alpha
Helix 23	AC5	A	672	684	Right-handed alpha
Helix 24	AC6	A	687	699	Right-handed alpha
Helix 25	AC7	A	706	718	Right-handed alpha
Helix 26	AC8	A	724	736	Right-handed alpha
Helix 27	AC9	B	214	219	Right-handed alpha
Helix 28	AD1	B	224	236	Right-handed alpha
Helix 29	AD2	B	237	239	Right-handed 310
Helix 30	AD3	B	241	249	Right-handed alpha
Helix 31	AD4	B	266	277	Right-handed alpha
Helix 32	AD5	B	297	304	Right-handed alpha
Helix 33	AD6	B	306	316	Right-handed alpha
Helix 34	AD7	B	330	333	Right-handed 310
Helix 35	AD8	B	344	347	Right-handed 310
Helix 36	AD9	B	348	359	Right-handed alpha
Helix 37	AE1	B	380	384	Right-handed 310
Helix 38	AE2	B	399	417	Right-handed alpha
Helix 39	AE3	B	425	433	Right-handed alpha
Helix 40	AE4	B	437	455	Right-handed alpha
Helix 41	AE5	B	467	472	Right-handed alpha
Helix 42	AE6	B	476	484	Right-handed alpha
Helix 43	AE7	B	498	503	Right-handed alpha
Helix 44	AE8	B	511	531	Right-handed alpha
Helix 45	AE9	B	548	559	Right-handed alpha
Helix 46	AF1	B	569	573	Right-handed 310
Helix 47	AF2	B	577	593	Right-handed alpha
Helix 48	AF3	B	604	609	Right-handed alpha
Helix 49	AF4	B	619	630	Right-handed alpha
Helix 50	AF5	B	648	655	Right-handed alpha
Helix 51	AF6	B	672	684	Right-handed alpha
Helix 52	AF7	B	687	699	Right-handed alpha
Helix 53	AF8	B	706	718	Right-handed alpha
Helix 54	AF9	B	724	737	Right-handed alpha
Helix 55	AG1	C	214	219	Right-handed alpha
Helix 56	AG2	C	223	235	Right-handed alpha
Helix 57	AG3	C	241	249	Right-handed alpha
Helix 58	AG4	C	266	277	Right-handed alpha
Helix 59	AG5	C	297	305	Right-handed alpha
Helix 60	AG6	C	306	317	Right-handed alpha
Helix 61	AG7	C	330	333	Right-handed 310
Helix 62	AG8	C	345	359	Right-handed alpha
Helix 63	AG9	C	380	384	Right-handed 310
Helix 64	AH1	C	399	411	Right-handed alpha
Helix 65	AH2	C	412	417	Right-handed alpha
Helix 66	AH3	C	425	433	Right-handed alpha
Helix 67	AH4	C	437	457	Right-handed alpha
Helix 68	AH5	C	468	472	Right-handed 310
Helix 69	AH6	C	476	487	Right-handed alpha
Helix 70	AH7	C	497	503	Right-handed alpha
Helix 71	AH8	C	512	530	Right-handed alpha
Helix 72	AH9	C	549	559	Right-handed alpha
Helix 73	AI1	C	569	573	Right-handed 310
Helix 74	AI2	C	577	593	Right-handed alpha
Helix 75	AI3	C	604	609	Right-handed alpha
Helix 76	AI4	C	619	630	Right-handed alpha
Helix 77	AI5	C	648	655	Right-handed alpha
Helix 78	AI6	C	672	684	Right-handed alpha
Helix 79	AI7	C	688	699	Right-handed alpha
Helix 80	AI8	C	706	717	Right-handed alpha
Helix 81	AI9	C	724	737	Right-handed alpha
Helix 82	AJ1	D	214	219	Right-handed alpha
Helix 83	AJ2	D	223	235	Right-handed alpha
Helix 84	AJ3	D	241	247	Right-handed alpha
Helix 85	AJ4	D	266	277	Right-handed alpha
Helix 86	AJ5	D	296	303	Right-handed alpha
Helix 87	AJ6	D	306	316	Right-handed alpha
Helix 88	AJ7	D	329	333	Right-handed 310
Helix 89	AJ8	D	345	359	Right-handed alpha
Helix 90	AJ9	D	380	384	Right-handed 310
Helix 91	AK1	D	399	411	Right-handed alpha
Helix 92	AK2	D	414	418	Right-handed 310
Helix 93	AK3	D	426	433	Right-handed alpha
Helix 94	AK4	D	437	454	Right-handed alpha
Helix 95	AK5	D	468	473	Right-handed 310
Helix 96	AK6	D	476	487	Right-handed alpha
Helix 97	AK7	D	495	503	Right-handed alpha
Helix 98	AK8	D	511	531	Right-handed alpha
Helix 99	AK9	D	548	559	Right-handed alpha
Helix 100	AL1	D	569	573	Right-handed 310
Helix 101	AL2	D	577	593	Right-handed alpha
Helix 102	AL3	D	604	609	Right-handed alpha
Helix 103	AL4	D	619	630	Right-handed alpha
Helix 104	AL5	D	648	655	Right-handed alpha
Helix 105	AL6	D	672	684	Right-handed alpha
Helix 106	AL7	D	687	697	Right-handed alpha
Helix 107	AL8	D	706	718	Right-handed alpha
Helix 108	AL9	D	724	736	Right-handed alpha
Helix 109	AM1	E	224	234	Right-handed alpha
Helix 110	AM2	E	241	249	Right-handed alpha
Helix 111	AM3	E	265	274	Right-handed alpha
Helix 112	AM4	E	296	304	Right-handed alpha
Helix 113	AM5	E	306	316	Right-handed alpha
Helix 114	AM6	E	329	333	Right-handed 310
Helix 115	AM7	E	345	359	Right-handed alpha
Helix 116	AM8	E	375	379	Right-handed 310
Helix 117	AM9	E	380	385	Right-handed 310
Helix 118	AN1	E	399	410	Right-handed alpha
Helix 119	AN2	E	411	417	Right-handed alpha
Helix 120	AN3	E	425	433	Right-handed alpha
Helix 121	AN4	E	437	456	Right-handed alpha
Helix 122	AN5	E	476	487	Right-handed alpha
Helix 123	AN6	E	495	503	Right-handed alpha
Helix 124	AN7	E	511	530	Right-handed alpha
Helix 125	AN8	E	549	560	Right-handed alpha
Helix 126	AN9	E	569	573	Right-handed 310
Helix 127	AO1	E	577	593	Right-handed alpha
Helix 128	AO2	E	604	608	Right-handed 310
Helix 129	AO3	E	619	630	Right-handed alpha
Helix 130	AO4	E	648	655	Right-handed alpha
Helix 131	AO5	E	672	684	Right-handed alpha
Helix 132	AO6	E	688	699	Right-handed alpha
Helix 133	AO7	E	706	718	Right-handed alpha
Helix 134	AO8	E	724	736	Right-handed alpha
Helix 135	AO9	F	214	219	Right-handed alpha
Helix 136	AP1	F	225	239	Right-handed alpha
Helix 137	AP2	F	241	249	Right-handed alpha
Helix 138	AP3	F	266	277	Right-handed alpha
Helix 139	AP4	F	296	317	Right-handed alpha
Helix 140	AP5	F	329	334	Right-handed alpha
Helix 141	AP6	F	345	360	Right-handed alpha
Helix 142	AP7	F	381	385	Right-handed 310
Helix 143	AP8	F	399	416	Right-handed alpha
Helix 144	AP9	F	425	433	Right-handed alpha
Helix 145	AQ1	F	437	459	Right-handed alpha
Helix 146	AQ2	F	468	472	Right-handed alpha
Helix 147	AQ3	F	476	487	Right-handed alpha
Helix 148	AQ4	F	495	503	Right-handed alpha
Helix 149	AQ5	F	512	530	Right-handed alpha
Helix 150	AQ6	F	549	560	Right-handed alpha
Helix 151	AQ7	F	569	573	Right-handed 310
Helix 152	AQ8	F	577	593	Right-handed alpha
Helix 153	AQ9	F	604	609	Right-handed alpha
Helix 154	AR1	F	619	630	Right-handed alpha
Helix 155	AR2	F	648	655	Right-handed alpha
Helix 156	AR3	F	672	684	Right-handed alpha
Helix 157	AR4	F	687	699	Right-handed alpha
Helix 158	AR5	F	706	719	Right-handed alpha
Helix 159	AR6	F	725	736	Right-handed alpha

There are 14 sheets in PDB entry 9PDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	367	373	parallel
Strand 3	A	323	326	parallel
Strand 4	A	283	284	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	640	643	parallel
Strand 3	A	598	602	parallel
Strand 4	A	564	568	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	665	666	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	323	328	parallel
Strand 3	B	367	373	parallel
Strand 4	B	256	259	parallel
Strand 5	B	391	394	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	568	first strand
Strand 2	B	598	602	parallel
Strand 3	B	640	646	parallel
Strand 4	B	536	542	parallel
Strand 5	B	664	666	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	323	328	parallel
Strand 3	C	367	373	parallel
Strand 4	C	256	259	parallel
Strand 5	C	391	394	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	598	602	parallel
Strand 3	C	640	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	665	666	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	323	327	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	392	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	464	465	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	645	parallel
Strand 4	D	536	542	parallel
Strand 5	D	665	666	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	373	parallel
Strand 4	E	256	259	parallel
Strand 5	E	391	394	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	568	first strand
Strand 2	E	600	602	parallel
Strand 3	E	640	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	325	328	parallel
Strand 3	F	370	373	parallel
Strand 4	F	256	259	parallel
Strand 5	F	391	394	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	602	parallel
Strand 3	F	639	646	parallel
Strand 4	F	536	542	parallel
Strand 5	F	665	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PDB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PDB