Analysis of interatomic Contacts of Structural Units in PDB entry:
9PDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PDH entry

There are 4 chains in PDB entry 9PDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 432
B
 MET 1TYR 432
C
 HIS 0TYR 432
D
 LYS 3TYR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 9PDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
13 27Right-handed alpha
Helix 3
AA3
A
28 39Right-handed alpha
Helix 4
AA4
A
56 69Right-handed alpha
Helix 5
AA5
A
84 95Right-handed alpha
Helix 6
AA6
A
105 116Right-handed alpha
Helix 7
AA7
A
133 142Right-handed alpha
Helix 8
AA8
A
143 150Right-handed 310
Helix 9
AA9
A
157 170Right-handed alpha
Helix 10
AB1
A
183 188Right-handed alpha
Helix 11
AB2
A
192 208Right-handed alpha
Helix 12
AB3
A
222 235Right-handed alpha
Helix 13
AB4
A
245 255Right-handed alpha
Helix 14
AB5
A
261 269Right-handed alpha
Helix 15
AB6
A
283 290Right-handed alpha
Helix 16
AB7
A
307 315Right-handed alpha
Helix 17
AB8
A
341 343Right-handed 310
Helix 18
AB9
A
344 350Right-handed alpha
Helix 19
AC1
A
354 375Right-handed alpha
Helix 20
AC2
A
376 379Right-handed 310
Helix 21
AC3
A
387 397Right-handed alpha
Helix 22
AC4
A
398 403Right-handed alpha
Helix 23
AC5
A
410 417Right-handed alpha
Helix 24
AC6
B
10 12Right-handed 310
Helix 25
AC7
B
13 27Right-handed alpha
Helix 26
AC8
B
28 39Right-handed alpha
Helix 27
AC9
B
56 69Right-handed alpha
Helix 28
AD1
B
84 94Right-handed alpha
Helix 29
AD2
B
105 116Right-handed alpha
Helix 30
AD3
B
133 142Right-handed alpha
Helix 31
AD4
B
143 150Right-handed 310
Helix 32
AD5
B
157 170Right-handed alpha
Helix 33
AD6
B
183 188Right-handed alpha
Helix 34
AD7
B
189 208Right-handed alpha
Helix 35
AD8
B
222 235Right-handed alpha
Helix 36
AD9
B
245 255Right-handed alpha
Helix 37
AE1
B
261 269Right-handed alpha
Helix 38
AE2
B
283 289Right-handed alpha
Helix 39
AE3
B
307 315Right-handed alpha
Helix 40
AE4
B
341 343Right-handed 310
Helix 41
AE5
B
344 350Right-handed alpha
Helix 42
AE6
B
354 375Right-handed alpha
Helix 43
AE7
B
387 397Right-handed alpha
Helix 44
AE8
B
410 418Right-handed alpha
Helix 45
AE9
C
10 12Right-handed 310
Helix 46
AF1
C
13 27Right-handed alpha
Helix 47
AF2
C
28 39Right-handed alpha
Helix 48
AF3
C
40 42Right-handed 310
Helix 49
AF4
C
56 69Right-handed alpha
Helix 50
AF5
C
84 93Right-handed alpha
Helix 51
AF6
C
105 116Right-handed alpha
Helix 52
AF7
C
133 142Right-handed alpha
Helix 53
AF8
C
146 150Right-handed 310
Helix 54
AF9
C
157 170Right-handed alpha
Helix 55
AG1
C
183 188Right-handed alpha
Helix 56
AG2
C
189 208Right-handed alpha
Helix 57
AG3
C
222 235Right-handed alpha
Helix 58
AG4
C
245 254Right-handed alpha
Helix 59
AG5
C
261 269Right-handed alpha
Helix 60
AG6
C
283 290Right-handed alpha
Helix 61
AG7
C
307 314Right-handed alpha
Helix 62
AG8
C
341 343Right-handed 310
Helix 63
AG9
C
344 349Right-handed alpha
Helix 64
AH1
C
354 375Right-handed alpha
Helix 65
AH2
C
387 403Right-handed alpha
Helix 66
AH3
C
410 418Right-handed alpha
Helix 67
AH4
D
10 12Right-handed 310
Helix 68
AH5
D
13 28Right-handed alpha
Helix 69
AH6
D
28 39Right-handed alpha
Helix 70
AH7
D
56 69Right-handed alpha
Helix 71
AH8
D
84 94Right-handed alpha
Helix 72
AH9
D
105 118Right-handed alpha
Helix 73
AI1
D
133 142Right-handed alpha
Helix 74
AI2
D
157 168Right-handed alpha
Helix 75
AI3
D
183 188Right-handed alpha
Helix 76
AI4
D
191 208Right-handed alpha
Helix 77
AI5
D
222 235Right-handed alpha
Helix 78
AI6
D
245 255Right-handed alpha
Helix 79
AI7
D
261 269Right-handed alpha
Helix 80
AI8
D
283 290Right-handed alpha
Helix 81
AI9
D
302 306Right-handed 310
Helix 82
AJ1
D
307 314Right-handed alpha
Helix 83
AJ2
D
341 343Right-handed 310
Helix 84
AJ3
D
344 350Right-handed alpha
Helix 85
AJ4
D
354 375Right-handed alpha
Helix 86
AJ5
D
387 397Right-handed alpha
Helix 87
AJ6
D
410 418Right-handed alpha
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There are 8 sheets in PDB entry 9PDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
98 100parallel
Strand 3
A
72 76parallel
Strand 4
A
48 52parallel
Strand 5
A
127 130parallel
Strand 6
A
152 155parallel
Strand 7
A
176 179parallel
Strand 8
A
382 384parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
238 242parallel
Strand 3
A
215 219parallel
Strand 4
A
271 274parallel
Strand 5
A
294 298parallel
Strand 6
A
335 339parallel
Strand 7
A
325 329anti-parallel
Strand 8
A
317 322anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
72 76parallel
Strand 3
B
48 52parallel
Strand 4
B
127 130parallel
Strand 5
B
152 155parallel
Strand 6
B
176 179parallel
Strand 7
B
382 384parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
238 242parallel
Strand 3
B
215 219parallel
Strand 4
B
271 274parallel
Strand 5
B
294 298parallel
Strand 6
B
335 339parallel
Strand 7
B
325 329anti-parallel
Strand 8
B
317 322anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
72 76parallel
Strand 3
C
48 52parallel
Strand 4
C
127 130parallel
Strand 5
C
152 155parallel
Strand 6
C
177 179parallel
Strand 7
C
383 384parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 259first strand
Strand 2
C
238 242parallel
Strand 3
C
215 219parallel
Strand 4
C
271 274parallel
Strand 5
C
294 298parallel
Strand 6
C
335 339parallel
Strand 7
C
325 329anti-parallel
Strand 8
C
317 322anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 76first strand
Strand 2
D
48 52parallel
Strand 3
D
127 130parallel
Strand 4
D
153 155parallel
Strand 5
D
177 179parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 259first strand
Strand 2
D
238 242parallel
Strand 3
D
215 219parallel
Strand 4
D
271 274parallel
Strand 5
D
294 298parallel
Strand 6
D
335 339parallel
Strand 7
D
325 330anti-parallel
Strand 8
D
315 322anti-parallel
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