Analysis of interatomic Contacts of Structural Units in PDB entry:
9PDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PDQ entry

There is 1 chain in PDB entry 9PDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9PDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
9 12Right-handed 310
Helix 3
AA3
A
15 28Right-handed alpha
Helix 4
AA4
A
29 37Right-handed alpha
Helix 5
AA5
A
38 43Right-handed alpha
Helix 6
AA6
A
59 65Right-handed alpha
Helix 7
AA7
A
85 96Right-handed alpha
Helix 8
AA8
A
104 108Right-handed 310
Helix 9
AA9
A
127 133Right-handed alpha
Helix 10
AB1
A
135 139Right-handed 310
Helix 11
AB2
A
140 168Right-handed alpha
Helix 12
AB3
A
169 189Right-handed alpha
Helix 13
AB4
A
192 222Right-handed alpha
Helix 14
AB5
A
223 234Right-handed alpha
Helix 15
AB6
A
234 253Right-handed alpha
Helix 16
AB7
A
255 269Right-handed alpha
Helix 17
AB8
A
270 276Right-handed 310
Helix 18
AB9
A
280 288Right-handed alpha
Helix 19
AC1
A
289 305Right-handed alpha
Helix 20
AC2
A
314 321Right-handed alpha
Helix 21
AC3
A
322 326Right-handed 310
Helix 22
AC4
A
332 337Right-handed alpha
Helix 23
AC5
A
337 363Right-handed alpha
Helix 24
AC6
A
364 368Right-handed 310
Helix 25
AC7
A
371 382Right-handed alpha
Helix 26
AC8
A
382 397Right-handed alpha
Helix 27
AC9
A
398 416Right-handed alpha
Helix 28
AD1
A
417 420Right-handed 310
Helix 29
AD2
A
424 454Right-handed alpha
Helix 30
AD3
A
458 477Right-handed alpha
Helix 31
AD4
A
479 484Right-handed alpha
Helix 32
AD5
A
489 506Right-handed alpha
Helix 33
AD6
A
507 509Right-handed 310
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There are 3 sheets in PDB entry 9PDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
117 119anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
75 78anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
110 112anti-parallel
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